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    LOC8084036 probable 2-oxoglutarate-dependent dioxygenase At5g05600 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8084036, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC8084036
    Gene description
    probable 2-oxoglutarate-dependent dioxygenase At5g05600
    Locus tag
    SORBI_3001G407800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8084036 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (69192953..69197731)

    Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110437413 Neighboring gene omega-3 fatty acid desaturase, chloroplastic Neighboring gene leucine--tRNA ligase, cytoplasmic Neighboring gene rhodanese-like domain-containing protein 10 Neighboring gene phosphoinositide phospholipase C 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable 2-oxoglutarate-dependent dioxygenase At5g05600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      69192953..69197731
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002465376.2 → XP_002465421.1  probable 2-oxoglutarate-dependent dioxygenase At5g05600

      See identical proteins and their annotated locations for XP_002465421.1

      UniProtKB/TrEMBL
      A0A921V0V5, C5WNJ8
      Conserved Domains (3) summary
      PLN02393
      Location:1 → 368
      PLN02393; leucoanthocyanidin dioxygenase like protein
      pfam03171
      Location:218 → 317
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
      pfam14226
      Location:63 → 168
      DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal
    Nucleotide Protein
    Heading Accession and Version

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