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    NRIP1 nuclear receptor interacting protein 1 [ Homo sapiens (human) ]

    Gene ID: 8204, updated on 27-Nov-2024

    Summary

    Official Symbol
    NRIP1provided by HGNC
    Official Full Name
    nuclear receptor interacting protein 1provided by HGNC
    Primary source
    HGNC:HGNC:8001
    See related
    Ensembl:ENSG00000180530 MIM:602490; AllianceGenome:HGNC:8001
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CAKUT3; RIP140
    Summary
    Nuclear receptor interacting protein 1 (NRIP1) is a nuclear protein that specifically interacts with the hormone-dependent activation domain AF2 of nuclear receptors. Also known as RIP140, this protein modulates transcriptional activity of the estrogen receptor. [provided by RefSeq, Jul 2008]
    Expression
    Ubiquitous expression in fat (RPKM 19.2), endometrium (RPKM 12.9) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See NRIP1 in Genome Data Viewer
    Location:
    21q11.2-q21.1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (14961235..15065936, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (13316424..13421206, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (16333556..16437321, complement)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61623 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 16 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18283 Neighboring gene adipocyte associated metabolic related lncRNA 1 Neighboring gene RBMX2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18284 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18285 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18286 Neighboring gene Sharpr-MPRA regulatory region 6418 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:16267450-16268649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18287 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:16283327-16284086 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:16284087-16284844 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:16299057-16299650 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:16299651-16300242 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61697 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61707 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:16377340-16378275 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61740 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:16403577-16404776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18288 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18289 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18290 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18291 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13216 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13217 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18292 Neighboring gene long intergenic non-protein coding RNA 2920 Neighboring gene uncharacterized LOC107985483 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:16493536-16494052 Neighboring gene Sharpr-MPRA regulatory region 10595

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Associated conditions

    Description Tests
    Congenital anomalies of kidney and urinary tract 3
    MedGen: C4748921 OMIM: 618270 GeneReviews: Not available
    Compare labs

    EBI GWAS Catalog

    Description
    A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.
    EBI GWAS Catalog
    Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
    EBI GWAS Catalog

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    matrix gag HIV-1 MA upregulates NRIP1 gene expression in HepG2 cells PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ77253

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables histone deacetylase binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nuclear estrogen receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables nuclear estrogen receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables nuclear glucocorticoid receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables nuclear glucocorticoid receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables nuclear receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables nuclear retinoid X receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transcription coactivator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transcription coactivator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables transcription corepressor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transcription corepressor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chromatin IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
     
    located_in fibrillar center IDA
    Inferred from Direct Assay
    more info
     
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    nuclear receptor-interacting protein 1
    Names
    nuclear factor RIP140
    receptor-interacting protein 140

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_050643.1 RefSeqGene

      Range
      5904..109669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_003489.4NP_003480.2  nuclear receptor-interacting protein 1

      See identical proteins and their annotated locations for NP_003480.2

      Status: REVIEWED

      Source sequence(s)
      AF127577, AK289786, BC040361
      Consensus CDS
      CCDS13568.1
      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Related
      ENSP00000327213.4, ENST00000318948.7
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      14961235..15065936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011529752.2XP_011528054.1  nuclear receptor-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_011528054.1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    2. XM_047440998.1XP_047296954.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    3. XM_047440999.1XP_047296955.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    4. XM_011529747.2XP_011528049.1  nuclear receptor-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_011528049.1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    5. XM_047440992.1XP_047296948.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    6. XM_047440990.1XP_047296946.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    7. XM_017028475.2XP_016883964.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    8. XM_047440994.1XP_047296950.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    9. XM_005261065.4XP_005261122.1  nuclear receptor-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005261122.1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    10. XM_005261063.4XP_005261120.1  nuclear receptor-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005261120.1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Related
      ENSP00000383060.1, ENST00000400199.5
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    11. XM_017028476.2XP_016883965.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    12. XM_047440991.1XP_047296947.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    13. XM_011529749.3XP_011528051.1  nuclear receptor-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_011528051.1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    14. XM_011529748.3XP_011528050.1  nuclear receptor-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_011528050.1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    15. XM_011529751.3XP_011528053.1  nuclear receptor-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_011528053.1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    16. XM_017028473.2XP_016883962.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
      UniProtKB/TrEMBL
      A8K171
      Conserved Domains (4) summary
      pfam15687
      Location:27330
      NRIP1_repr_1; Nuclear receptor-interacting protein 1 repression 1
      pfam15688
      Location:411738
      NRIP1_repr_2; Nuclear receptor-interacting protein 1 repression 2
      pfam15689
      Location:753840
      NRIP1_repr_3; Nuclear receptor-interacting protein 1 repression 3
      pfam15690
      Location:8491158
      NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    17. XM_047440993.1XP_047296949.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    18. XM_047440996.1XP_047296952.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    19. XM_047440997.1XP_047296953.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    20. XM_047440995.1XP_047296951.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      13316424..13421206 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054324867.1XP_054180842.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    2. XM_054324871.1XP_054180846.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    3. XM_054324864.1XP_054180839.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    4. XM_054324863.1XP_054180838.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    5. XM_054324859.1XP_054180834.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    6. XM_054324873.1XP_054180848.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    7. XM_054324874.1XP_054180849.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    8. XM_054324875.1XP_054180850.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    9. XM_054324865.1XP_054180840.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    10. XM_054324870.1XP_054180845.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    11. XM_054324858.1XP_054180833.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    12. XM_054324854.1XP_054180829.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    13. XM_054324855.1XP_054180830.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    14. XM_054324857.1XP_054180832.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    15. XM_054324856.1XP_054180831.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    16. XM_054324866.1XP_054180841.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    17. XM_054324853.1XP_054180828.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    18. XM_054324869.1XP_054180844.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    19. XM_054324852.1XP_054180827.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    20. XM_054324860.1XP_054180835.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    21. XM_054324862.1XP_054180837.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    22. XM_054324872.1XP_054180847.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    23. XM_054324868.1XP_054180843.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8
    24. XM_054324861.1XP_054180836.1  nuclear receptor-interacting protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P48552, Q8IWE8