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    LOC8258805 uncharacterized LOC8258805 [ Ricinus communis (castor bean) ]

    Gene ID: 8258805, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8258805
    Gene description
    uncharacterized LOC8258805
    Locus tag
    RCOM_1000440
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8258805 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 9 NC_063264.1 (1177648..1180789)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994339.1 (227442..230550, complement)

    Chromosome 9 - NC_063264.1Genomic Context describing neighboring genes Neighboring gene universal stress protein PHOS34 Neighboring gene pectinesterase inhibitor 1 Neighboring gene scarecrow-like protein 18 Neighboring gene DELLA protein RGL1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC8258805

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063264.1 Reference ASM1957865v1

      Range
      1177648..1180789
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002519169.4 → XP_002519215.1  uncharacterized protein LOC8258805

      See identical proteins and their annotated locations for XP_002519215.1

      UniProtKB/TrEMBL
      B9RZP6
      Conserved Domains (2) summary
      pfam04438
      Location:380 → 410
      zf-HIT; HIT zinc finger
      pfam04795
      Location:278 → 362
      PAPA-1; PAPA-1-like conserved region

    2. XM_025157378.2 → XP_025013146.1  uncharacterized protein LOC8258805

      UniProtKB/TrEMBL
      B9RZP6
      Conserved Domains (2) summary
      pfam04438
      Location:380 → 410
      zf-HIT; HIT zinc finger
      pfam04795
      Location:278 → 362
      PAPA-1; PAPA-1-like conserved region
    Nucleotide Protein
    Heading Accession and Version

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