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    LOC8289517 4-alpha-glucanotransferase DPE2 [ Ricinus communis (castor bean) ]

    Gene ID: 8289517, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8289517
    Gene description
    4-alpha-glucanotransferase DPE2
    Locus tag
    RCOM_1271340
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8289517 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 10 NC_063265.1 (24403129..24422537, complement)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994425.1 (193835..213382, complement)

    Chromosome 10 - NC_063265.1Genomic Context describing neighboring genes Neighboring gene proline-rich protein 12 Neighboring gene phosphatidylinositol 4-kinase gamma 8 Neighboring gene small nucleolar RNA R71 Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4-alpha-glucanotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    4-alpha-glucanotransferase DPE2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063265.1 Reference ASM1957865v1

      Range
      24403129..24422537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015722081.3 → XP_015577567.1  4-alpha-glucanotransferase DPE2

      UniProtKB/TrEMBL
      B9SCF0
      Conserved Domains (4) summary
      cd05815
      Location:17 → 117
      CBM20_DPE2_repeat1; Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on ...
      cd05816
      Location:160 → 257
      CBM20_DPE2_repeat2; Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on ...
      PLN02950
      Location:8 → 913
      PLN02950; 4-alpha-glucanotransferase
      pfam02446
      Location:272 → 914
      Glyco_hydro_77; 4-alpha-glucanotransferase
    Nucleotide Protein
    Heading Accession and Version

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