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    CTRG_04456 DNA-directed RNA polymerase II 140 kDa polypeptide [ Candida tropicalis MYA-3404 ]

    Gene ID: 8298689, updated on 17-May-2024

    Summary

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    Gene symbol
    CTRG_04456
    Gene description
    DNA-directed RNA polymerase II 140 kDa polypeptide
    Locus tag
    CTRG_04456
    See related
    FungiDB:CTRG_04456; VEuPathDB:CTRG_04456
    Gene type
    protein coding
    RNA name
    DNA-directed RNA polymerase II 140 kDa polypeptide
    RefSeq status
    PROVISIONAL
    Organism
    Candida tropicalis MYA-3404 (strain: MYA-3404)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida
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    Genomic context

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    See CTRG_04456 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_003020058.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase II 19 kDa polypeptide Neighboring gene 60S ribosomal protein L23, mitochondrial precursor Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003020058.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Butler G, et al. Nature, 2009 Jun 4. PMID 19465905, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonucleoside binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase II 140 kDa polypeptide
    XP_002550158.1
    • Candida DB at Institut Pasteur CTRG_04456

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003020058.1 Reference assembly

      Range
      406307..410029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002550112.1 → XP_002550158.1  DNA-directed RNA polymerase II 140 kDa polypeptide [Candida tropicalis MYA-3404]

      See identical proteins and their annotated locations for XP_002550158.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C5MEG3, Q6RYI3
      Conserved Domains (1) summary
      PRK08565
      Location:26 → 1229
      PRK08565; DNA-directed RNA polymerase subunit B; Provisional
    Protein Accession Links
    GenPept Link UniProtKB Link
    EER31673.1

    Gene LinkOut

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