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    CBG15684 Protein CBG15684 [ Caenorhabditis briggsae ]

    Gene ID: 8582797, updated on 6-Jun-2024

    Summary

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    Gene symbol
    CBG15684
    Gene description
    Protein CBG15684
    Locus tag
    CBG_15684
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caenorhabditis briggsae (strain: AF16)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See CBG15684 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_013490.2 (1043221..1044432)

    Chromosome III - NC_013490.2Genomic Context describing neighboring genes Neighboring gene Protein CBG15682 Neighboring gene Protein CBG15683 Neighboring gene Protein CBG25806 Neighboring gene Protein CBR-RAL-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013490.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein CBG15684
    XP_002640803.1
    • contains similarity to Interpro domain IPR006575 (RWD domain);
      Predicted

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013490.2 Reference assembly

      Range
      1043221..1044432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002640757.1 → XP_002640803.1  Protein CBG15684 [Caenorhabditis briggsae]

      See identical proteins and their annotated locations for XP_002640803.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAE9D8M9, A0AAE9EHC0, A8XMJ0
      Conserved Domains (2) summary
      smart00591
      Location:4 → 110
      RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
      pfam14634
      Location:117 → 149
      zf-RING_5; zinc-RING finger domain
    Nucleotide Protein
    Heading Accession and Version

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