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    ECU03_0420 uncharacterized protein [ Encephalitozoon cuniculi GB-M1 ]

    Gene ID: 858715, updated on 17-May-2024

    Summary

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    Gene symbol
    ECU03_0420
    Gene description
    uncharacterized protein
    Locus tag
    ECU03_0420
    See related
    MicrosporidiaDB:ECU03_0420; VEuPathDB:ECU03_0420
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Encephalitozoon cuniculi GB-M1 (isolate: GB-M1)
    Lineage
    Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon
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    Genomic context

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    See ECU03_0420 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003230.1 (50234..52810, complement)

    Chromosome III - NC_003230.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003230.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation. Peyretaillade E, et al. BMC Genomics, 2009 Dec 15. PMID 20003517, Free PMC Article
    2. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Katinka MD, et al. Nature, 2001 Nov 22. PMID 11719806
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of FACT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_597553.1
    • 03_0420, similarity to yeast CDC68 (GENERAL TRANSCRIPTION, PASSAGE THROUGH START), CC68_yeast, gene found by Glimmer

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003230.1 Reference assembly

      Range
      50234..52810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001040917.1 → NP_597553.1  uncharacterized protein ECU03_0420 [Encephalitozoon cuniculi GB-M1]

      See identical proteins and their annotated locations for NP_597553.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      M1JKB5, Q8SW60
      Conserved Domains (5) summary
      COG5406
      Location:1 → 829
      COG5406; Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and repair, Chromatin structure and dynamics]
      cd01066
      Location:147 → 315
      APP_MetAP; A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity ...
      pfam08512
      Location:653 → 744
      Rtt106; Histone chaperone Rttp106-like
      pfam08644
      Location:404 → 543
      SPT16; FACT complex subunit (SPT16/CDC68)
      pfam14826
      Location:26 → 110
      FACT-Spt16_Nlob; FACT complex subunit SPT16 N-terminal lobe domain
    Nucleotide Protein
    Heading Accession and Version

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