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    hypothetical protein [ Dictyostelium discoideum AX4 ]

    Gene ID: 8616417, updated on 14-Nov-2024

    Summary

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    Official Full Name
    hypothetical protein
    Primary source
    dictyBase:DDB_G0268168
    Locus tag
    DDB_G0268168
    See related
    AmoebaDB:DDB_G0268168; VEuPathDB:DDB_G0268168
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Dictyostelium discoideum AX4 (strain: AX4)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
    Old locus tag
    DDBDRAFT_0189828; DDB_0189828
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_007087.3 (1591385..1593342, complement)

    Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene v-SNARE family protein Neighboring gene hypothetical protein Neighboring gene hssA/2C/7E family protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007087.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Peptide: N- glycanase is expressed in prestalk cells and plays a role in the differentiation of prespore cells during development of Dictyostelium discoideum. Gosain A, et al. Indian J Exp Biol, 2014 Mar. PMID 24669662
    2. Identification and characterization of peptide: N-glycanase from Dictyostelium discoideum. Gosain A, et al. BMC Biochem, 2012 Jun 8. PMID 22682495, Free PMC Article
    3. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by dictyBase

    Function Evidence Code Pubs
    enables peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within aggregation involved in sorocarp development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in glycoprotein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within sorocarp spore cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in sporulation resulting in formation of a cellular spore IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_007087.3 Reference assembly

      Range
      1591385..1593342 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_642513.1 → XP_647605.1  hypothetical protein DDB_G0268168 [Dictyostelium discoideum AX4]

      See identical proteins and their annotated locations for XP_647605.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q55FC8
      Conserved Domains (4) summary
      cd01951
      Location:402 → 618
      lectin_L-type; legume lectins
      COG1305
      Location:194 → 294
      YebA; Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]
      pfam01841
      Location:188 → 252
      Transglut_core; Transglutaminase-like superfamily
      pfam03835
      Location:239 → 290
      Rad4; Rad4 transglutaminase-like domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials