U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Pmar_PMAR000559 U6 small nuclear ribonucleoprotein E, putative [ Perkinsus marinus ATCC 50983 ]

    Gene ID: 9047332, updated on 28-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    Pmar_PMAR000559
    Gene description
    U6 small nuclear ribonucleoprotein E, putative
    Locus tag
    Pmar_PMAR000559
    See related
    VectorBase:PMAR000559
    Gene type
    protein coding
    RNA name
    U6 small nuclear ribonucleoprotein E, putative
    RefSeq status
    PROVISIONAL
    Organism
    Perkinsus marinus ATCC 50983 (strain: ATCC 50983, culture-collection: ATCC:50983)
    Lineage
    Eukaryota; Alveolata; Perkinsea; Perkinsida; Perkinsidae; Perkinsus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Pmar_PMAR000559 in Genome Data Viewer
    Exon count:
    4

    NW_003205331.1Genomic Context describing neighboring genes Neighboring gene U1 small nuclear ribonucleoprotein C, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_003205331.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Names
    U6 small nuclear ribonucleoprotein E, putative
    XP_002771506.1
    • encoded by transcript Pmar_PMAR000559-RA

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    mRNA and Protein(s)

    1. XM_002771460.1 → XP_002771506.1  U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus ATCC 50983]

      See identical proteins and their annotated locations for XP_002771506.1

      UniProtKB/TrEMBL
      C5LIY7
      Conserved Domains (1) summary
      cd01732
      Location:17 → 93
      LSm5; Like-Sm protein 5
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials