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    Pmar_PMAR020741 26S protease regulatory subunit, putative [ Perkinsus marinus ATCC 50983 ]

    Gene ID: 9056973, updated on 28-Dec-2023

    Summary

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    Gene symbol
    Pmar_PMAR020741
    Gene description
    26S protease regulatory subunit, putative
    Locus tag
    Pmar_PMAR020741
    See related
    VectorBase:PMAR020741
    Gene type
    protein coding
    RNA name
    26S protease regulatory subunit, putative
    RefSeq status
    PROVISIONAL
    Organism
    Perkinsus marinus ATCC 50983 (strain: ATCC 50983, culture-collection: ATCC:50983)
    Lineage
    Eukaryota; Alveolata; Perkinsea; Perkinsida; Perkinsidae; Perkinsus
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    Genomic context

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    See Pmar_PMAR020741 in Genome Data Viewer
    Exon count:
    12

    NW_003212056.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene tRNA-Thr Neighboring gene hypothetical protein Neighboring gene multiprotein bridging factor type 1, putative Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003212056.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome-activating activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    26S protease regulatory subunit, putative
    XP_002781356.1
    • encoded by transcript Pmar_PMAR020741-RA
      Gene spans sequencing gaps and may be missing exons.

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    mRNA and Protein(s)

    1. XM_002781310.1 → XP_002781356.1  26S protease regulatory subunit, putative [Perkinsus marinus ATCC 50983]

      See identical proteins and their annotated locations for XP_002781356.1

      UniProtKB/TrEMBL
      C5KQQ5
      Conserved Domains (2) summary
      PTZ00361
      Location:31 → 384
      PTZ00361; 26 proteosome regulatory subunit 4-like protein; Provisional
      pfam00004
      Location:166 → 299
      AAA; ATPase family associated with various cellular activities (AAA)
    Nucleotide Protein
    Heading Accession and Version

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