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    rpmE 50S ribosomal protein L31 [ Clostridium perfringens ]

    Gene ID: 93001253, updated on 3-Dec-2024

    Summary

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    Gene symbol
    rpmE
    Gene description
    50S ribosomal protein L31
    Locus tag
    I6G60_RS04280
    Gene type
    protein coding
    Organism
    Clostridium perfringens (strain: FDAARGOS_903, culture-collection: DSM:756, type-material: type strain of Clostridium perfringens)
    Lineage
    Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
    Old locus tag
    I6G60_04280
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    Genomic context

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    NZ_CP065681.1Genomic Context describing neighboring genes Neighboring gene transcription termination factor Rho Neighboring gene glycosyltransferase Neighboring gene thymidine kinase Neighboring gene peptide chain release factor N(5)-glutamine methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP065681.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Whole genome analysis reveals the diversity and evolutionary relationships between necrotic enteritis-causing strains of Clostridium perfringens. Lacey JA, et al. BMC Genomics, 2018 May 22. PMID 29788909, Free PMC Article
    2. Liberation of zinc-containing L31 (RpmE) from ribosomes by its paralogous gene product, YtiA, in Bacillus subtilis. Akanuma G, et al. J Bacteriol, 2006 Apr. PMID 16547061, Free PMC Article
    3. Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Makarova KS, et al. Genome Biol, 2001. PMID 11574053, Free PMC Article
    4. Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome. Nanamiya H, et al. Mol Microbiol, 2004 Apr. PMID 15049826

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    50S ribosomal protein L31

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP065681.1 Reference assembly

      Range
      841690..841896 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_003452406.1 MULTISPECIES: 50S ribosomal protein L31 [Clostridium]

      See identical proteins and their annotated locations for WP_003452406.1

      UniProtKB/Swiss-Prot
      Q0SQX8, Q0TNA7, Q8XIB6
      UniProtKB/TrEMBL
      A0A133N7A2, A0AAV3BP82, A0AAV3FAN2, B1BRS3
    Nucleotide Protein
    Heading Accession and Version