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    LOC9300829 ABC transporter A family member 9 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9300829, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9300829
    Gene description
    ABC transporter A family member 9
    Locus tag
    ARALYDRAFT_685858
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9300829 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302548.1 (20164564..20169219, complement)

    NW_003302548.1Genomic Context describing neighboring genes Neighboring gene ABC transporter A family member 12 Neighboring gene uncharacterized LOC9300828 Neighboring gene ABC transporter A family member 10 Neighboring gene germin-like protein subfamily 3 member 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302548 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter A family member 9
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302548.1 Reference v.1.0 Primary Assembly

      Range
      20164564..20169219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002866405.2 → XP_002866451.1  ABC transporter A family member 9

      See identical proteins and their annotated locations for XP_002866451.1

      UniProtKB/TrEMBL
      D7MKM3
      Conserved Domains (3) summary
      TIGR01188
      Location:546 → 847
      drrA; daunorubicin resistance ABC transporter ATP-binding subunit
      cd03263
      Location:520 → 753
      ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A
      pfam12698
      Location:223 → 441
      ABC2_membrane_3; ABC-2 family transporter protein
    Nucleotide Protein
    Heading Accession and Version

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