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    LOC9320340 putative glucose-6-phosphate 1-epimerase [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9320340, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9320340
    Gene description
    putative glucose-6-phosphate 1-epimerase
    Locus tag
    ARALYDRAFT_896086
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9320340 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (168871..171714, complement)

    NW_003302553.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase Neighboring gene cell division control protein 48 homolog C Neighboring gene SUPPRESSOR OF GAMMA RESPONSE 1 Neighboring gene putative pentatricopeptide repeat-containing protein At3g01580 Neighboring gene uncharacterized LOC110230045

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative glucose-6-phosphate 1-epimerase
    Names
    aldose 1-epimerase family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302553.1 Reference v.1.0 Primary Assembly

      Range
      168871..171714 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021032500.1 → XP_020888159.1  putative glucose-6-phosphate 1-epimerase isoform X1

      Conserved Domains (1) summary
      cd09020
      Location:14 → 320
      D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

    2. XM_021032499.1 → XP_020888158.1  putative glucose-6-phosphate 1-epimerase isoform X1

      Conserved Domains (1) summary
      cd09020
      Location:14 → 320
      D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

    3. XM_021032498.1 → XP_020888157.1  putative glucose-6-phosphate 1-epimerase isoform X1

      Conserved Domains (1) summary
      cd09020
      Location:14 → 320
      D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

    4. XM_021032497.1 → XP_020888156.1  putative glucose-6-phosphate 1-epimerase isoform X1

      Conserved Domains (1) summary
      cd09020
      Location:14 → 320
      D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

    5. XM_021032501.1 → XP_020888160.1  putative glucose-6-phosphate 1-epimerase isoform X2

      UniProtKB/TrEMBL
      D7L9N3
      Conserved Domains (1) summary
      cd09020
      Location:14 → 285
      D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

    6. XM_002884228.2 → XP_002884274.1  putative glucose-6-phosphate 1-epimerase isoform X2

      See identical proteins and their annotated locations for XP_002884274.1

      UniProtKB/TrEMBL
      D7L9N3
      Conserved Domains (1) summary
      cd09020
      Location:14 → 285
      D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like
    Nucleotide Protein
    Heading Accession and Version

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