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    GKD17_RS02075 type B 50S ribosomal protein L31 [ Phocaeicola dorei ]

    Gene ID: 93445470, updated on 10-Oct-2024

    Summary

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    Gene symbol
    GKD17_RS02075
    Gene description
    type B 50S ribosomal protein L31
    Locus tag
    GKD17_RS02075
    Gene type
    protein coding
    Organism
    Phocaeicola dorei (strain: DSM 17855, nat-host: Homo sapiens, culture-collection: DSM:17855, type-material: type strain of Bacteroides dorei)
    Lineage
    Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
    Old locus tag
    GKD17_02115
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    Genomic context

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    NZ_CP046176.1Genomic Context describing neighboring genes Neighboring gene phenylacetate--CoA ligase family protein Neighboring gene DUF3256 family protein Neighboring gene class II fructose-bisphosphate aldolase Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP046176.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The methylome of the gut microbiome: disparate Dam methylation patterns in intestinal Bacteroides dorei. Leonard MT, et al. Front Microbiol, 2014. PMID 25101067, Free PMC Article
    2. YkgM and YkgO maintain translation by replacing their paralogs, zinc-binding ribosomal proteins L31 and L36, with identical activities. Ueta M, et al. Genes Cells, 2020 Aug. PMID 32559334
    3. Liberation of zinc-containing L31 (RpmE) from ribosomes by its paralogous gene product, YtiA, in Bacillus subtilis. Akanuma G, et al. J Bacteriol, 2006 Apr. PMID 16547061, Free PMC Article
    4. Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Makarova KS, et al. Genome Biol, 2001. PMID 11574053, Free PMC Article
    5. Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome. Nanamiya H, et al. Mol Microbiol, 2004 Apr. PMID 15049826

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    type B 50S ribosomal protein L31

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP046176.1 Reference assembly

      Range
      497496..497750 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_007842212.1 MULTISPECIES: type B 50S ribosomal protein L31 [Phocaeicola]

      See identical proteins and their annotated locations for WP_007842212.1

      UniProtKB/TrEMBL
      A0A076J5K4, C3RG56, I9Q6Z6, I9QTR3
    Nucleotide Protein
    Heading Accession and Version