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    trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL [ Vibrio crassostreae ]

    Gene ID: 93901399, updated on 14-Oct-2024

    Summary

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    Gene symbol
    trmL
    Gene description
    tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL
    Locus tag
    OC193_RS14565
    Gene type
    protein coding
    Organism
    Vibrio crassostreae (strain: LMG 22240, culture-collection: BCCM/LMG:22240, type-material: type strain of Vibrio crassostreae)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
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    Genomic context

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    Location:
    chromosome: 1

    1 - NZ_AP025476.1Genomic Context describing neighboring genes Neighboring gene response regulator Neighboring gene envelope stress sensor histidine kinase CpxA Neighboring gene superoxide dismutase Neighboring gene FxsA family protein Neighboring gene aspartate ammonia-lyase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_AP025476.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. YibK is the 2'-O-methyltransferase TrmL that modifies the wobble nucleotide in Escherichia coli tRNA(Leu) isoacceptors. Benítez-Páez A, et al. RNA, 2010 Nov. PMID 20855540, Free PMC Article
    2. Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): a cofactor bound at a site formed by a knot. Lim K, et al. Proteins, 2003 Apr 1. PMID 12596263
    3. Vibrio Clade 3.0: New Vibrionaceae Evolutionary Units Using Genome-Based Approach. Jiang C, et al. Curr Microbiol, 2021 Dec 14. PMID 34905112

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL
    WP_009844716.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_AP025476.1 Reference assembly

      Range
      3226063..3226542
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_009844716.1 MULTISPECIES: tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL [Vibrio]

      See identical proteins and their annotated locations for WP_009844716.1

      UniProtKB/TrEMBL
      A0A0T7D2D9, A0A109D7Y9, A0A1A6LBP4, A0A1C3IYF6, A0A1C3JHM5, A0A1E5ENP2, A0A1R3EQ10, A0A1R3FEC9, A0A1V9JM49, A0A2N7J178, A0A4U1WEJ4, A0A4U2BRS4, A0A5M9NEY2, A0A7Y7N2E7, A0AA86WTX5, B7VLP4
    Nucleotide Protein
    Heading Accession and Version