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    ybjO putative inner membrane protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945488, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybjO
    Official Full Name
    putative inner membrane protein
    Primary source
    ECOCYC:G6448
    Locus tag
    b0858
    See related
    ASAP:ABE-0002922
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0849
    Summary
    Membrane topology predictions using experimentally determined C terminus locations indicate that YbjO has 4 transmembrane helices and the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: G6448].
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    Genomic context

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    Sequence:
    NC_000913.3 (897989..898477)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putrescine ABC transporter ATP binding subunit Neighboring gene putrescine ABC transporter membrane subunit PotH Neighboring gene putrescine ABC transporter membrane subunit PotI Neighboring gene 23S rRNA m(5)U747 methyltransferase Neighboring gene L-arginine ABC transporter periplasmic binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks. Rooney JP, et al. Genomics, 2009 Jan. PMID 18824089, Free PMC Article
    2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    3. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    4. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative inner membrane protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      897989..898477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415379.1 putative inner membrane protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415379.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5ZME8
      Conserved Domains (1) summary
      pfam10767
      Location:21 → 161
      DUF2593; Protein of unknown function (DUF2593)
    Nucleotide Protein
    Heading Accession and Version

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