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    intR putative integrase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946976, updated on 3-Dec-2024

    Summary

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    Official Symbol
    intR
    Official Full Name
    putative integrase
    Primary source
    ECOCYC:G6676
    Locus tag
    b1345
    See related
    ASAP:ABE-0004517
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1342; ydaP
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    Genomic context

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    Sequence:
    NC_000913.3 (1412000..1413235, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase DbpA Neighboring gene tRNA cytosine(32) 2-sulfurtransferase TtcA Neighboring gene excisionase Neighboring gene double-strand break reduction protein Neighboring gene ncRNA Neighboring gene endodeoxyribonuclease toxin RalR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    2. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables site-specific recombinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in DNA recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chromosome segregation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in establishment of integrated proviral latency IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in symbiont entry into host cell IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in viral genome integration into host DNA IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative integrase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1412000..1413235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415861.1 putative integrase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415861.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AJ64, A0A5D8MR18, A0A7H9SAR3
      Conserved Domains (2) summary
      cd01189
      Location:206 → 392
      INT_ICEBs1_C_like; C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons
      pfam12167
      Location:5 → 69
      Arm-DNA-bind_2; Arm DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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