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    ygaV putative DNA-binding transcriptional regulator YgaV [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947136, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygaV
    Official Full Name
    putative DNA-binding transcriptional regulator YgaV
    Primary source
    ECOCYC:G7397
    Locus tag
    b2667
    See related
    ASAP:ABE-0008784
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2661
    Summary
    The physiological role or natural inducer for ygaVP is unknown. [More information is available at EcoGene: EG13524].
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    Genomic context

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    Sequence:
    NC_000913.3 (2797211..2797510)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene K(+) binding protein Neighboring gene Pmp3 family protein YqaE Neighboring gene thiosulfate sulfurtransferase YgaP Neighboring gene DNA-binding transcriptional repressor StpA with RNA chaperone activity

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ygaVP genes of Escherichia coli form a tributyltin-inducible operon. Gueuné H, et al. Appl Environ Microbiol, 2008 Mar. PMID 18245262, Free PMC Article
    2. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    3. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative DNA-binding transcriptional regulator YgaV

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2797211..2797510
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417153.1 putative DNA-binding transcriptional regulator YgaV [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417153.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7I8YZV6, A0AAE9UC10
      Conserved Domains (1) summary
      NF033788
      Location:14 → 90
      HTH_metalloreg; metalloregulator ArsR/SmtB family transcription factor
    Nucleotide Protein
    Heading Accession and Version

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