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    yicH AsmA family protein YicH [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948171, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yicH
    Official Full Name
    AsmA family protein YicH
    Primary source
    ECOCYC:EG11684
    Locus tag
    b3655
    See related
    ASAP:ABE-0011949
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3645
    Summary
    Sequence similarity suggests that YicH may containe -barrel structure(s) . [More information is available at EcoCyc: EG11684].
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    Genomic context

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    Sequence:
    NC_000913.3 (3830457..3832166)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene glutamate:sodium symporter Neighboring gene xanthine:H(+) symporter XanP Neighboring gene alpha-D-xyloside xylohydrolase Neighboring gene putative xyloside transporter YicJ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    2. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    3. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Burland V, et al. Genomics, 1993 Jun. PMID 7686882
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AsmA family protein YicH

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3830457..3832166
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418112.1 AsmA family protein YicH [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418112.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FV43, A0A7L7EE68, A0A8S7EI93
      Conserved Domains (1) summary
      pfam05170
      Location:17 → 522
      AsmA; AsmA family
    Nucleotide Protein
    Heading Accession and Version

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