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    ypdI colanic acid synthesis putative lipoprotein YpdI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 949107, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ypdI
    Official Full Name
    colanic acid synthesis putative lipoprotein YpdI
    Primary source
    ECOCYC:G7239
    Locus tag
    b2376
    See related
    ASAP:ABE-0007839
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2372
    Summary
    RcsA, but not RcsF, is necessary for YpdI-dependent colanic acid synthesis. [More information is available at EcoGene: EG14376]. YpdI is a putative membrane lipoprotein which has been shown to play a role in colonic acid synthesis. [More information is available at EcoCyc: G7239].
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    Genomic context

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    Sequence:
    NC_000913.3 (2494698..2494973)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene formyl-CoA transferase Neighboring gene protein YfdX Neighboring gene DUF2545 domain-containing protein YfdY Neighboring gene palmitoleoyl acyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ypdI gene codes for a putative lipoprotein involved in the synthesis of colanic acid in Escherichia coli. Potrykus J, et al. FEMS Microbiol Lett, 2004 Jun 15. PMID 15183873
    2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    4. Structure, assembly and regulation of expression of capsules in Escherichia coli. Whitfield C, et al. Mol Microbiol, 1999 Mar. PMID 10200953
    5. Organization of the Escherichia coli K-12 gene cluster responsible for production of the extracellular polysaccharide colanic acid. Stevenson G, et al. J Bacteriol, 1996 Aug. PMID 8759852, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within colanic acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    colanic acid synthesis putative lipoprotein YpdI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2494698..2494973
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416877.1 colanic acid synthesis putative lipoprotein YpdI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416877.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377D1Q4
    Nucleotide Protein
    Heading Accession and Version

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