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    VOLCADRAFT_82431 uncharacterized protein [ Volvox carteri f. nagariensis ]

    Gene ID: 9616515, updated on 10-Jan-2024

    Summary

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    Gene symbol
    VOLCADRAFT_82431
    Gene description
    uncharacterized protein
    Locus tag
    VOLCADRAFT_82431
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Volvox carteri f. nagariensis (strain: Eve, forma: nagariensis)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; CS clade; Chlamydomonadales; Volvocaceae; Volvox
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    Genomic context

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    See VOLCADRAFT_82431 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    11

    NW_003307580.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene kinesin FAP125-like protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003307580.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Prochnik SE, et al. Science, 2010 Jul 9. PMID 20616280, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADPH binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    XP_002953640.1
    • predicted protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003307580.1 Reference assembly

      Range
      1134604..1141916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002953594.1 → XP_002953640.1  uncharacterized protein VOLCADRAFT_82431 [Volvox carteri f. nagariensis]

      See identical proteins and their annotated locations for XP_002953640.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      D8U4X2
      Conserved Domains (4) summary
      PLN02696
      Location:1 → 453
      PLN02696; 1-deoxy-D-xylulose-5-phosphate reductoisomerase
      pfam02670
      Location:60 → 187
      DXP_reductoisom; 1-deoxy-D-xylulose 5-phosphate reductoisomerase
      pfam08436
      Location:201 → 284
      DXP_redisom_C; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
      pfam13288
      Location:317 → 435
      DXPR_C; DXP reductoisomerase C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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