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    LOC9633407 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [ Selaginella moellendorffii ]

    Gene ID: 9633407, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC9633407
    Gene description
    1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic
    Locus tag
    SELMODRAFT_229643
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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    Genomic context

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    See LOC9633407 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314384.1 (138488..140858, complement)

    NW_003314384.1Genomic Context describing neighboring genes Neighboring gene splicing factor U2af large subunit B Neighboring gene pentatricopeptide repeat-containing protein At4g02750-like Neighboring gene pentatricopeptide repeat-containing protein At5g27110-like Neighboring gene pheophytinase, chloroplastic Neighboring gene CASP-like protein 2U5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003314384 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADPH binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314384.1 Reference v1.0

      Range
      138488..140858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002991729.2 → XP_002991775.1  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic

      See identical proteins and their annotated locations for XP_002991775.1

      UniProtKB/TrEMBL
      D8T827
      Conserved Domains (4) summary
      PLN02696
      Location:34 → 488
      PLN02696; 1-deoxy-D-xylulose-5-phosphate reductoisomerase
      pfam02670
      Location:94 → 222
      DXP_reductoisom; 1-deoxy-D-xylulose 5-phosphate reductoisomerase
      pfam08436
      Location:236 → 319
      DXP_redisom_C; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
      pfam13288
      Location:352 → 470
      DXPR_C; DXP reductoisomerase C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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