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    LOC9640297 ribulose-phosphate 3-epimerase, cytoplasmic isoform [ Selaginella moellendorffii ]

    Gene ID: 9640297, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC9640297
    Gene description
    ribulose-phosphate 3-epimerase, cytoplasmic isoform
    Locus tag
    SELMODRAFT_231837
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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    Genomic context

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    See LOC9640297 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314278.1 (2018686..2019784, complement)

    NW_003314278.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g02750-like Neighboring gene pentatricopeptide repeat-containing protein At4g02750-like Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g34110

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003314278 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables D-ribulose-phosphate 3-epimerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt, non-oxidative branch IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribulose-phosphate 3-epimerase, cytoplasmic isoform

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314278.1 Reference v1.0

      Range
      2018686..2019784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002971725.2 → XP_002971771.1  ribulose-phosphate 3-epimerase, cytoplasmic isoform

      UniProtKB/TrEMBL
      D8RKW5
      Conserved Domains (1) summary
      PLN02334
      Location:2 → 223
      PLN02334; ribulose-phosphate 3-epimerase
    Nucleotide Protein
    Heading Accession and Version

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