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    OT_ostta06g02880 RNA-binding motif protein 8 [ Ostreococcus tauri ]

    Gene ID: 9835554, updated on 16-Nov-2023

    Summary

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    Gene symbol
    OT_ostta06g02880
    Gene description
    RNA-binding motif protein 8
    Locus tag
    OT_ostta06g02880
    Gene type
    protein coding
    RNA name
    RNA-binding motif protein 8
    RefSeq status
    PROVISIONAL
    Organism
    Ostreococcus tauri (strain: RCC4221)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
    Old locus tag
    Ot06g03130
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    Genomic context

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    See OT_ostta06g02880 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Sequence:
    Chromosome: 6; NC_014431.2 (486699..487034)

    Chromosome 6 - NC_014431.2Genomic Context describing neighboring genes Neighboring gene Pentapeptide repeat Neighboring gene unnamed product Neighboring gene Proliferating cell nuclear antigen,PCNA,N-terminal Neighboring gene Pterin-binding

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_014431.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. Blanc-Mathieu R, et al. BMC Genomics, 2014 Dec 13. PMID 25494611, Free PMC Article
    2. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Derelle E, et al. Proc Natl Acad Sci U S A, 2006 Aug 1. PMID 16868079, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    RNA-binding motif protein 8

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014431.2 Reference assembly

      Range
      486699..487034
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003079878.1 → XP_003079926.1  RNA-binding motif protein 8 [Ostreococcus tauri]

      See identical proteins and their annotated locations for XP_003079926.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q016T9
      Conserved Domains (2) summary
      COG0724
      Location:5 → 107
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12324
      Location:18 → 104
      RRM_RBM8; RNA recognition motif in RNA-binding protein RBM8A, RBM8B nd similar proteins
    Nucleotide Protein
    Heading Accession and Version

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