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    OT_ostta02g00880 DNA-directed RNA polymerase, 30-40kDa subunit,conserved site [ Ostreococcus tauri ]

    Gene ID: 9835646, updated on 16-Nov-2023

    Summary

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    Gene symbol
    OT_ostta02g00880
    Gene description
    DNA-directed RNA polymerase, 30-40kDa subunit,conserved site
    Locus tag
    OT_ostta02g00880
    Gene type
    protein coding
    RNA name
    DNA-directed RNA polymerase, 30-40kDa subunit,conserved site
    RefSeq status
    PROVISIONAL
    Organism
    Ostreococcus tauri (strain: RCC4221)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
    Old locus tag
    Ot02g01760
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    Genomic context

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    See OT_ostta02g00880 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_014427.2 (234482..235530, complement)

    Chromosome 2 - NC_014427.2Genomic Context describing neighboring genes Neighboring gene Glycosyl transferase, family 1 Neighboring gene Oxoglutarate/iron-dependent dioxygenase Neighboring gene Ribosomal protein L36e Neighboring gene Glutamyl-tRNA(Gln) amidotransferase A subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_014427.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. Blanc-Mathieu R, et al. BMC Genomics, 2014 Dec 13. PMID 25494611, Free PMC Article
    2. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Derelle E, et al. Proc Natl Acad Sci U S A, 2006 Aug 1. PMID 16868079, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    DNA-directed RNA polymerase, 30-40kDa subunit,conserved site

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014427.2 Reference assembly

      Range
      234482..235530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003074791.1 → XP_003074839.1  DNA-directed RNA polymerase, 30-40kDa subunit,conserved site [Ostreococcus tauri]

      See identical proteins and their annotated locations for XP_003074839.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q01F02
      Conserved Domains (2) summary
      cd07031
      Location:10 → 295
      RNAP_II_RPB3; RPB3 subunit of Eukaryotic RNA polymerase II
      PRK00783
      Location:11 → 288
      PRK00783; DNA-directed RNA polymerase subunit D; Provisional
    Nucleotide Protein
    Heading Accession and Version

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