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    OT_ostta13g02040 DNA primase, small subunit, eukaryotic/archaeal [ Ostreococcus tauri ]

    Gene ID: 9837485, updated on 11-Apr-2024

    Summary

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    Gene symbol
    OT_ostta13g02040
    Gene description
    DNA primase, small subunit, eukaryotic/archaeal
    Locus tag
    OT_ostta13g02040
    Gene type
    protein coding
    RNA name
    DNA primase, small subunit, eukaryotic/archaeal
    RefSeq status
    PROVISIONAL
    Organism
    Ostreococcus tauri (strain: RCC4221)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
    Old locus tag
    Ot13g02130
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    Genomic context

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    See OT_ostta13g02040 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    1
    Sequence:
    Chromosome: 13; NC_014438.2 (348201..349559)

    Chromosome 13 - NC_014438.2Genomic Context describing neighboring genes Neighboring gene Peptidase C2, calpain family Neighboring gene UTP--glucose-1-phosphate uridylyltransferase Neighboring gene unnamed product Neighboring gene Helicase, C-terminal

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_014438.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. Blanc-Mathieu R, et al. BMC Genomics, 2014 Dec 13. PMID 25494611, Free PMC Article
    2. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Derelle E, et al. Proc Natl Acad Sci U S A, 2006 Aug 1. PMID 16868079, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA primase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication, synthesis of primer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of alpha DNA polymerase:primase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    DNA primase, small subunit, eukaryotic/archaeal

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014438.2 Reference assembly

      Range
      348201..349559
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003082636.1 → XP_003082684.1  DNA primase, small subunit, eukaryotic/archaeal [Ostreococcus tauri]

      See identical proteins and their annotated locations for XP_003082684.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1Y5I9Q6, Q00WX0
      Conserved Domains (1) summary
      cd04860
      Location:61 → 396
      AE_Prim_S; AE_Prim_S: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In addition to its ...
    Nucleotide Protein
    Heading Accession and Version

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