SNP Links for Gene (Select 100033812) - SNP

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Select item 14905546621.

rs1490554662 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:25239059 (GRCh38)
15:25484206 (GRCh37)
Canonical SPDI:: NC_000015.10:25239058:G:C
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25239059G>C, NC_000015.9:g.25484206G>C, NG_002690.1:g.458150G>C

Select item 14893938922.

rs1489393892 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25240179 (GRCh38)
15:25485326 (GRCh37)
Canonical SPDI:: NC_000015.10:25240178:A:G
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25240179A>G, NC_000015.9:g.25485326A>G, NG_002690.1:g.459270A>G, NR_146177.1:n.16255A>G

Select item 14883674483.

rs1488367448 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:25238713 (GRCh38)
15:25483860 (GRCh37)
Canonical SPDI:: NC_000015.10:25238712:G:A,NC_000015.10:25238712:G:C
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25238713G>A, NC_000015.10:g.25238713G>C, NC_000015.9:g.25483860G>A, NC_000015.9:g.25483860G>C, NG_002690.1:g.457804G>A, NG_002690.1:g.457804G>C

Select item 14878701974.

rs1487870197 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25239830 (GRCh38)
15:25484977 (GRCh37)
Canonical SPDI:: NC_000015.10:25239829:C:T
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25239830C>T, NC_000015.9:g.25484977C>T, NG_002690.1:g.458921C>T

Select item 14876206205.

rs1487620620 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25239719 (GRCh38)
15:25484866 (GRCh37)
Canonical SPDI:: NC_000015.10:25239718:C:T
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.25239719C>T, NC_000015.9:g.25484866C>T, NG_002690.1:g.458810C>T, NR_146177.1:n.16181C>T

Select item 14861590266.

rs1486159026 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATAG>- [Show Flanks]
Chromosome:: 15:25240247 (GRCh38)
15:25485394 (GRCh37)
Canonical SPDI:: NC_000015.10:25240243:TAGATAG:TAG
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAG=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000019/5 (TOPMED)
-=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.25240247_25240250del, NC_000015.9:g.25485394_25485397del, NG_002690.1:g.459338_459341del

Select item 14839901137.

rs1483990113 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25239573 (GRCh38)
15:25484720 (GRCh37)
Canonical SPDI:: NC_000015.10:25239572:G:A
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25239573G>A, NC_000015.9:g.25484720G>A, NG_002690.1:g.458664G>A

Select item 14828464228.

rs1482846422 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:25238786 (GRCh38)
15:25483933 (GRCh37)
Canonical SPDI:: NC_000015.10:25238785:G:A,NC_000015.10:25238785:G:T
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25238786G>A, NC_000015.10:g.25238786G>T, NC_000015.9:g.25483933G>A, NC_000015.9:g.25483933G>T, NG_002690.1:g.457877G>A, NG_002690.1:g.457877G>T

Select item 14815702889.

rs1481570288 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25237950 (GRCh38)
15:25483097 (GRCh37)
Canonical SPDI:: NC_000015.10:25237949:C:T
Gene:: SNORD115-37 (Varview), SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25237950C>T, NC_000015.9:g.25483097C>T, NG_002690.1:g.457041C>T

Select item 147959400210.

rs1479594002 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:25238155 (GRCh38)
15:25483302 (GRCh37)
Canonical SPDI:: NC_000015.10:25238154:C:A,NC_000015.10:25238154:C:T
Gene:: SNORD115-37 (Varview), SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.25238155C>A, NC_000015.10:g.25238155C>T, NC_000015.9:g.25483302C>A, NC_000015.9:g.25483302C>T, NG_002690.1:g.457246C>A, NG_002690.1:g.457246C>T

Select item 147926090811.

rs1479260908 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:25240165 (GRCh38)
15:25485312 (GRCh37)
Canonical SPDI:: NC_000015.10:25240164:C:A
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25240165C>A, NC_000015.9:g.25485312C>A, NG_002690.1:g.459256C>A

Select item 147883059912.

rs1478830599 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25240258 (GRCh38)
15:25485405 (GRCh37)
Canonical SPDI:: NC_000015.10:25240257:G:T
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25240258G>T, NC_000015.9:g.25485405G>T, NG_002690.1:g.459349G>T

Select item 147784654713.

rs1477846547 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:25238768 (GRCh38)
15:25483915 (GRCh37)
Canonical SPDI:: NC_000015.10:25238767:A:C
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25238768A>C, NC_000015.9:g.25483915A>C, NG_002690.1:g.457859A>C

Select item 147187902614.

rs1471879026 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25239256 (GRCh38)
15:25484403 (GRCh37)
Canonical SPDI:: NC_000015.10:25239255:C:T
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25239256C>T, NC_000015.9:g.25484403C>T, NG_002690.1:g.458347C>T

Select item 147130383915.

rs1471303839 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:25240219 (GRCh38)
15:25485366 (GRCh37)
Canonical SPDI:: NC_000015.10:25240218:G:A,NC_000015.10:25240218:G:C
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25240219G>A, NC_000015.10:g.25240219G>C, NC_000015.9:g.25485366G>A, NC_000015.9:g.25485366G>C, NG_002690.1:g.459310G>A, NG_002690.1:g.459310G>C

Select item 147071184116.

rs1470711841 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25239598 (GRCh38)
15:25484745 (GRCh37)
Canonical SPDI:: NC_000015.10:25239597:C:T
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.25239598C>T, NC_000015.9:g.25484745C>T, NG_002690.1:g.458689C>T

Select item 147012343717.

rs1470123437 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25239217 (GRCh38)
15:25484364 (GRCh37)
Canonical SPDI:: NC_000015.10:25239216:G:T
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000389/7 (TOMMO)
T=0.001369/4 (KOREAN)
T=0.00463/1 (Vietnamese)
HGVS:: NC_000015.10:g.25239217G>T, NC_000015.9:g.25484364G>T, NG_002690.1:g.458308G>T

Select item 146963001618.

rs1469630016 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:25239587 (GRCh38)
15:25484734 (GRCh37)
Canonical SPDI:: NC_000015.10:25239586:C:G,NC_000015.10:25239586:C:T
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000132/2 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000064/9 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000015.10:g.25239587C>G, NC_000015.10:g.25239587C>T, NC_000015.9:g.25484734C>G, NC_000015.9:g.25484734C>T, NG_002690.1:g.458678C>G, NG_002690.1:g.458678C>T

Select item 146926707719.

rs1469267077 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25240070 (GRCh38)
15:25485217 (GRCh37)
Canonical SPDI:: NC_000015.10:25240069:C:T
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25240070C>T, NC_000015.9:g.25485217C>T, NG_002690.1:g.459161C>T

Select item 146725016020.

rs1467250160 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25238747 (GRCh38)
15:25483894 (GRCh37)
Canonical SPDI:: NC_000015.10:25238746:G:A
Gene:: SNORD115-38 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25238747G>A, NC_000015.9:g.25483894G>A, NG_002690.1:g.457838G>A