SNP Links for Gene (Select 100873964) - SNP

Links from Gene

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Select item 14822584341.

rs1482258434 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: Y:6357996 (GRCh38)
Y:6226037 (GRCh37)
Canonical SPDI:: NC_000024.10:6357995:TTT:TT
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.0044/7 (1000Genomes)
HGVS:: NC_000024.10:g.6357998del, NC_000024.9:g.6226039del

Select item 14702731082.

rs1470273108 [Homo sapiens]

Variant type:: DEL
Alleles:: ATC>- [Show Flanks]
Chromosome:: Y:6358001 (GRCh38)
Y:6226042 (GRCh37)
Canonical SPDI:: NC_000024.10:6358000:ATC:
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.0001/1 (GnomAD)
HGVS:: NC_000024.10:g.6358001_6358003del, NC_000024.9:g.6226042_6226044del

Select item 14511780703.

rs1451178070 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:6357570 (GRCh38)
Y:6225611 (GRCh37)
Canonical SPDI:: NC_000024.10:6357569:T:G
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0./0 (SGDP_PRJ)
G=0.1185/164 (KOREAN)
HGVS:: NC_000024.10:g.6357570T>G, NC_000024.9:g.6225611T>G

Select item 14446358994.

rs1444635899 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:6358778 (GRCh38)
Y:6226819 (GRCh37)
Canonical SPDI:: NC_000024.10:6358777:C:T
Gene:: LINC00280 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000024.10:g.6358778C>T, NC_000024.9:g.6226819C>T, NR_046505.1:n.135G>A

Select item 14399855655.

rs1439985565 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: Y:6363355 (GRCh38)
Y:6231396 (GRCh37)
Canonical SPDI:: NC_000024.10:6363354:G:A,NC_000024.10:6363354:G:T
Gene:: LINC00280 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000024.10:g.6363355G>A, NC_000024.10:g.6363355G>T, NC_000024.9:g.6231396G>A, NC_000024.9:g.6231396G>T

Select item 14109865756.

rs1410986575 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCTT [Show Flanks]
Chromosome:: Y:6358041 (GRCh38)
Y:6226083 (GRCh37)
Canonical SPDI:: NC_000024.10:6358041:CTT:CTTCCTT
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.6358044_6358045insCCTT, NC_000024.9:g.6226085_6226086insCCTT

Select item 14079448327.

rs1407944832 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:6358057 (GRCh38)
Y:6226098 (GRCh37)
Canonical SPDI:: NC_000024.10:6358056:C:T
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: C=0./0 (SGDP_PRJ)
T=0.2549/311 (KOREAN)
HGVS:: NC_000024.10:g.6358057C>T, NC_000024.9:g.6226098C>T

Select item 14043052048.

rs1404305204 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:6358045 (GRCh38)
Y:6226086 (GRCh37)
Canonical SPDI:: NC_000024.10:6358044:T:C
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.5/3 (SGDP_PRJ)
HGVS:: NC_000024.10:g.6358045T>C, NC_000024.9:g.6226086T>C

Select item 13673262579.

rs1367326257 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: Y:6358054 (GRCh38)
Y:6226096 (GRCh37)
Canonical SPDI:: NC_000024.10:6358054:TT:TTT
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.6358056dup, NC_000024.9:g.6226097dup

Select item 135570700910.

rs1355707009 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:6361454 (GRCh38)
Y:6229495 (GRCh37)
Canonical SPDI:: NC_000024.10:6361453:G:A
Gene:: LINC00280 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.6361454G>A, NC_000024.9:g.6229495G>A

Select item 135089057911.

rs1350890579 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: Y:6358067 (GRCh38)
Y:6226108 (GRCh37)
Canonical SPDI:: NC_000024.10:6358066:A:C,NC_000024.10:6358066:A:G,NC_000024.10:6358066:A:T
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: C=0.0105/12 (KOREAN)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000024.10:g.6358067A>C, NC_000024.10:g.6358067A>G, NC_000024.10:g.6358067A>T, NC_000024.9:g.6226108A>C, NC_000024.9:g.6226108A>G, NC_000024.9:g.6226108A>T

Select item 134059437912.

rs1340594379 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:6361847 (GRCh38)
Y:6229888 (GRCh37)
Canonical SPDI:: NC_000024.10:6361846:T:C
Gene:: LINC00280 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.6361847T>C, NC_000024.9:g.6229888T>C

Select item 130711944913.

rs1307119449 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTC>- [Show Flanks]
Chromosome:: Y:6358063 (GRCh38)
Y:6226104 (GRCh37)
Canonical SPDI:: NC_000024.10:6358060:TCCTC:TC
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.6358063_6358065del, NC_000024.9:g.6226104_6226106del

Select item 129407829514.

rs1294078295 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:6361840 (GRCh38)
Y:6229881 (GRCh37)
Canonical SPDI:: NC_000024.10:6361839:C:T
Gene:: LINC00280 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0./0 (SGDP_PRJ)
T=0.0025/4 (1000Genomes)
T=0.019/563 (GnomAD)
HGVS:: NC_000024.10:g.6361840C>T, NC_000024.9:g.6229881C>T

Select item 128773535315.

rs1287735353 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:6357033 (GRCh38)
Y:6225074 (GRCh37)
Canonical SPDI:: NC_000024.10:6357032:G:A
Gene:: LINC00280 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
HGVS:: NC_000024.10:g.6357033G>A, NC_000024.9:g.6225074G>A

Select item 128270469316.

rs1282704693 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:6361187 (GRCh38)
Y:6229228 (GRCh37)
Canonical SPDI:: NC_000024.10:6361186:C:T
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.6361187C>T, NC_000024.9:g.6229228C>T

Select item 127570904917.

rs1275709049 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:6363062 (GRCh38)
Y:6231103 (GRCh37)
Canonical SPDI:: NC_000024.10:6363061:C:A
Gene:: LINC00280 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.6363062C>A, NC_000024.9:g.6231103C>A

Select item 127174792018.

rs1271747920 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: Y:6357993 (GRCh38)
Y:6226034 (GRCh37)
Canonical SPDI:: NC_000024.10:6357992:T:A
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.0072/10 (KOREAN)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000024.10:g.6357993T>A, NC_000024.9:g.6226034T>A

Select item 125301163719.

rs1253011637 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: Y:6357999 (GRCh38)
Y:6226041 (GRCh37)
Canonical SPDI:: NC_000024.10:6357999:T:TT
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.0001/1 (GnomAD)
HGVS:: NC_000024.10:g.6358000dup, NC_000024.9:g.6226041dup

Select item 123189173120.

rs1231891731 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: Y:6358001 (GRCh38)
Y:6226042 (GRCh37)
Canonical SPDI:: NC_000024.10:6358000:A:T
Gene:: LINC00280 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.46/12 (SGDP_PRJ)
HGVS:: NC_000024.10:g.6358001A>T, NC_000024.9:g.6226042A>T

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