SNP Links for Gene (Select 10888) - SNP

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Select item 14915493001.

rs1491549300 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>-,CGCG [Show Flanks]
Chromosome:: 11:94381584 (GRCh38)
11:94114750 (GRCh37)
Canonical SPDI:: NC_000011.10:94381578:GCGCGCG:GCGCG,NC_000011.10:94381578:GCGCGCG:GCGCGCGCG
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGCGCGCG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
GC=0.000035/1 (TOMMO)
HGVS:: NC_000011.10:g.94381580CG[2], NC_000011.10:g.94381580CG[4], NC_000011.9:g.94114746CG[2], NC_000011.9:g.94114746CG[4]

Select item 14914418322.

rs1491441832 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 11:94400547 (GRCh38)
11:94133714 (GRCh37)
Canonical SPDI:: NC_000011.10:94400547::C
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00017/2 (ALFA)
C=0.00119/21 (GnomAD)
HGVS:: NC_000011.10:g.94400547_94400548insC, NC_000011.9:g.94133713_94133714insC

Select item 14913111793.

rs1491311179 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 11:94379370 (GRCh38)
11:94112536 (GRCh37)
Canonical SPDI:: NC_000011.10:94379369:CA:
Gene:: GPR83 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000011.10:g.94379370_94379371del, NC_000011.9:g.94112536_94112537del, NM_016540.4:c.*778_*779del, NM_016540.3:c.*778_*779del, NM_001330345.2:c.*778_*779del, NM_001330345.1:c.*778_*779del

Select item 14911788864.

rs1491178886 has merged into rs34496676 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAA>-,AA,AAAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 11:94400555 (GRCh38)
11:94133721 (GRCh37)
Canonical SPDI:: NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAA,NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:94400546:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.94400555_94400561del, NC_000011.10:g.94400557_94400561del, NC_000011.10:g.94400559_94400561del, NC_000011.10:g.94400560_94400561del, NC_000011.10:g.94400561del, NC_000011.10:g.94400561dup, NC_000011.10:g.94400560_94400561dup, NC_000011.10:g.94400559_94400561dup, NC_000011.10:g.94400558_94400561dup, NC_000011.10:g.94400557_94400561dup, NC_000011.10:g.94400554_94400561dup, NC_000011.9:g.94133721_94133727del, NC_000011.9:g.94133723_94133727del, NC_000011.9:g.94133725_94133727del, NC_000011.9:g.94133726_94133727del, NC_000011.9:g.94133727del, NC_000011.9:g.94133727dup, NC_000011.9:g.94133726_94133727dup, NC_000011.9:g.94133725_94133727dup, NC_000011.9:g.94133724_94133727dup, NC_000011.9:g.94133723_94133727dup, NC_000011.9:g.94133720_94133727dup

Select item 14911778925.

rs1491177892 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 11:94382343 (GRCh38)
11:94115509 (GRCh37)
Canonical SPDI:: NC_000011.10:94382342:CA:
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00159/44 (TOMMO)
HGVS:: NC_000011.10:g.94382343_94382344del, NC_000011.9:g.94115509_94115510del

Select item 14911349206.

rs1491134920 has merged into rs200200146 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAAA>-,AAA,AAAA,AAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 11:94379372 (GRCh38)
11:94112538 (GRCh37)
Canonical SPDI:: NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:A,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:94379370:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: GPR83 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.94379372_94379387del, NC_000011.10:g.94379375_94379387del, NC_000011.10:g.94379376_94379387del, NC_000011.10:g.94379377_94379387del, NC_000011.10:g.94379380_94379387del, NC_000011.10:g.94379381_94379387del, NC_000011.10:g.94379382_94379387del, NC_000011.10:g.94379384_94379387del, NC_000011.10:g.94379385_94379387del, NC_000011.10:g.94379386_94379387del, NC_000011.10:g.94379387del, NC_000011.10:g.94379387dup, NC_000011.10:g.94379386_94379387dup, NC_000011.10:g.94379385_94379387dup, NC_000011.10:g.94379384_94379387dup, NC_000011.10:g.94379383_94379387dup, NC_000011.10:g.94379382_94379387dup, NC_000011.10:g.94379377_94379387dup, NC_000011.10:g.94379376_94379387dup, NC_000011.10:g.94379387_94379388insAAAAAAAAAAAAAAAAAA, NC_000011.9:g.94112538_94112553del, NC_000011.9:g.94112541_94112553del, NC_000011.9:g.94112542_94112553del, NC_000011.9:g.94112543_94112553del, NC_000011.9:g.94112546_94112553del, NC_000011.9:g.94112547_94112553del, NC_000011.9:g.94112548_94112553del, NC_000011.9:g.94112550_94112553del, NC_000011.9:g.94112551_94112553del, NC_000011.9:g.94112552_94112553del, NC_000011.9:g.94112553del, NC_000011.9:g.94112553dup, NC_000011.9:g.94112552_94112553dup, NC_000011.9:g.94112551_94112553dup, NC_000011.9:g.94112550_94112553dup, NC_000011.9:g.94112549_94112553dup, NC_000011.9:g.94112548_94112553dup, NC_000011.9:g.94112543_94112553dup, NC_000011.9:g.94112542_94112553dup, NC_000011.9:g.94112553_94112554insAAAAAAAAAAAAAAAAAA, NM_016540.4:c.*763_*778del, NM_016540.4:c.*766_*778del, NM_016540.4:c.*767_*778del, NM_016540.4:c.*768_*778del, NM_016540.4:c.*771_*778del, NM_016540.4:c.*772_*778del, NM_016540.4:c.*773_*778del, NM_016540.4:c.*775_*778del, NM_016540.4:c.*776_*778del, NM_016540.4:c.*777_*778del, NM_016540.4:c.*778del, NM_016540.4:c.*778dup, NM_016540.4:c.*777_*778dup, NM_016540.4:c.*776_*778dup, NM_016540.4:c.*775_*778dup, NM_016540.4:c.*774_*778dup, NM_016540.4:c.*773_*778dup, NM_016540.4:c.*768_*778dup, NM_016540.4:c.*767_*778dup, NM_016540.4:c.*778_*779insTTTTTTTTTTTTTTTTTT, NM_016540.3:c.*763_*778del, NM_016540.3:c.*766_*778del, NM_016540.3:c.*767_*778del, NM_016540.3:c.*768_*778del, NM_016540.3:c.*771_*778del, NM_016540.3:c.*772_*778del, NM_016540.3:c.*773_*778del, NM_016540.3:c.*775_*778del, NM_016540.3:c.*776_*778del, NM_016540.3:c.*777_*778del, NM_016540.3:c.*778del, NM_016540.3:c.*778dup, NM_016540.3:c.*777_*778dup, NM_016540.3:c.*776_*778dup, NM_016540.3:c.*775_*778dup, NM_016540.3:c.*774_*778dup, NM_016540.3:c.*773_*778dup, NM_016540.3:c.*768_*778dup, NM_016540.3:c.*767_*778dup, NM_016540.3:c.*778_*779insTTTTTTTTTTTTTTTTTT, NM_001330345.2:c.*763_*778del, NM_001330345.2:c.*766_*778del, NM_001330345.2:c.*767_*778del, NM_001330345.2:c.*768_*778del, NM_001330345.2:c.*771_*778del, NM_001330345.2:c.*772_*778del, NM_001330345.2:c.*773_*778del, NM_001330345.2:c.*775_*778del, NM_001330345.2:c.*776_*778del, NM_001330345.2:c.*777_*778del, NM_001330345.2:c.*778del, NM_001330345.2:c.*778dup, NM_001330345.2:c.*777_*778dup, NM_001330345.2:c.*776_*778dup, NM_001330345.2:c.*775_*778dup, NM_001330345.2:c.*774_*778dup, NM_001330345.2:c.*773_*778dup, NM_001330345.2:c.*768_*778dup, NM_001330345.2:c.*767_*778dup, NM_001330345.2:c.*778_*779insTTTTTTTTTTTTTTTTTT, NM_001330345.1:c.*763_*778del, NM_001330345.1:c.*766_*778del, NM_001330345.1:c.*767_*778del, NM_001330345.1:c.*768_*778del, NM_001330345.1:c.*771_*778del, NM_001330345.1:c.*772_*778del, NM_001330345.1:c.*773_*778del, NM_001330345.1:c.*775_*778del, NM_001330345.1:c.*776_*778del, NM_001330345.1:c.*777_*778del, NM_001330345.1:c.*778del, NM_001330345.1:c.*778dup, NM_001330345.1:c.*777_*778dup, NM_001330345.1:c.*776_*778dup, NM_001330345.1:c.*775_*778dup, NM_001330345.1:c.*774_*778dup, NM_001330345.1:c.*773_*778dup, NM_001330345.1:c.*768_*778dup, NM_001330345.1:c.*767_*778dup, NM_001330345.1:c.*778_*779insTTTTTTTTTTTTTTTTTT

Select item 14906951797.

rs1490695179 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:94385946 (GRCh38)
11:94119112 (GRCh37)
Canonical SPDI:: NC_000011.10:94385945:G:A,NC_000011.10:94385945:G:C
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.94385946G>A, NC_000011.10:g.94385946G>C, NC_000011.9:g.94119112G>A, NC_000011.9:g.94119112G>C

Select item 14905493458.

rs1490549345 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:94382755 (GRCh38)
11:94115921 (GRCh37)
Canonical SPDI:: NC_000011.10:94382754:T:C
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.94382755T>C, NC_000011.9:g.94115921T>C

Select item 14905375089.

rs1490537508 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:94385188 (GRCh38)
11:94118354 (GRCh37)
Canonical SPDI:: NC_000011.10:94385187:C:A
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000214/3 (ALFA)
A=0.000036/5 (GnomAD)
A=0.000042/11 (TOPMED)
HGVS:: NC_000011.10:g.94385188C>A, NC_000011.9:g.94118354C>A

Select item 149053306810.

rs1490533068 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:94381921 (GRCh38)
11:94115087 (GRCh37)
Canonical SPDI:: NC_000011.10:94381920:C:A
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.94381921C>A, NC_000011.9:g.94115087C>A

Select item 149049182811.

rs1490491828 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:94401430 (GRCh38)
11:94134596 (GRCh37)
Canonical SPDI:: NC_000011.10:94401429:G:A,NC_000011.10:94401429:G:T
Gene:: GPR83 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00004/1 (TOMMO)
HGVS:: NC_000011.10:g.94401430G>A, NC_000011.10:g.94401430G>T, NC_000011.9:g.94134596G>A, NC_000011.9:g.94134596G>T

Select item 149045909812.

rs1490459098 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 11:94399096 (GRCh38)
11:94132263 (GRCh37)
Canonical SPDI:: NC_000011.10:94399096:AAAAAA:AAAAAAA
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAAAAAA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.94399102dup, NC_000011.9:g.94132268dup

Select item 149017056713.

rs1490170567 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:94399712 (GRCh38)
11:94132878 (GRCh37)
Canonical SPDI:: NC_000011.10:94399711:A:C
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.94399712A>C, NC_000011.9:g.94132878A>C

Select item 148996614314.

rs1489966143 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:94386791 (GRCh38)
11:94119957 (GRCh37)
Canonical SPDI:: NC_000011.10:94386790:A:G,NC_000011.10:94386790:A:T
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.94386791A>G, NC_000011.10:g.94386791A>T, NC_000011.9:g.94119957A>G, NC_000011.9:g.94119957A>T

Select item 148986525815.

rs1489865258 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:94400291 (GRCh38)
11:94133458 (GRCh37)
Canonical SPDI:: NC_000011.10:94400291:TTT:TTTT
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.94400294dup, NC_000011.9:g.94133460dup

Select item 148976394516.

rs1489763945 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:94400147 (GRCh38)
11:94133313 (GRCh37)
Canonical SPDI:: NC_000011.10:94400146:A:G
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.94400147A>G, NC_000011.9:g.94133313A>G

Select item 148965309117.

rs1489653091 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:94391498 (GRCh38)
11:94124664 (GRCh37)
Canonical SPDI:: NC_000011.10:94391497:C:A
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.94391498C>A, NC_000011.9:g.94124664C>A

Select item 148965139718.

rs1489651397 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:94385799 (GRCh38)
11:94118965 (GRCh37)
Canonical SPDI:: NC_000011.10:94385798:C:T
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.94385799C>T, NC_000011.9:g.94118965C>T

Select item 148945596619.

rs1489455966 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:94396024 (GRCh38)
11:94129190 (GRCh37)
Canonical SPDI:: NC_000011.10:94396023:A:G
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.0002/1 (ALFA)
G=0.0002/1 (Estonian)
HGVS:: NC_000011.10:g.94396024A>G, NC_000011.9:g.94129190A>G

Select item 148941805620.

rs1489418056 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:94392106 (GRCh38)
11:94125272 (GRCh37)
Canonical SPDI:: NC_000011.10:94392105:A:G
Gene:: GPR83 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.94392106A>G, NC_000011.9:g.94125272A>G

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