SNP Links for Gene (Select 120787) - SNP

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Links from Gene

Items: 1 to 20 of 908

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Select item 14893882931.

rs1489388293 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 11:6197706 (GRCh38)
11:6218936 (GRCh37)
Canonical SPDI:: NC_000011.10:6197705:T:
Gene:: OR52W1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.6197706del, NC_000011.9:g.6218936del

Select item 14844812992.

rs1484481299 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:6197975 (GRCh38)
11:6219205 (GRCh37)
Canonical SPDI:: NC_000011.10:6197974:C:G
Gene:: OR52W1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.6197975C>G, NC_000011.9:g.6219205C>G

Select item 14841207973.

rs1484120797 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 11:6198302 (GRCh38)
11:6219532 (GRCh37)
Canonical SPDI:: NC_000011.10:6198299:CTCT:CT
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCT=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.6198300CT[1], NC_000011.9:g.6219530CT[1]

Select item 14840988084.

rs1484098808 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:6197381 (GRCh38)
11:6218611 (GRCh37)
Canonical SPDI:: NC_000011.10:6197380:G:T
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.6197381G>T, NC_000011.9:g.6218611G>T

Select item 14831568535.

rs1483156853 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:6198767 (GRCh38)
11:6219997 (GRCh37)
Canonical SPDI:: NC_000011.10:6198766:G:C
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.6198767G>C, NC_000011.9:g.6219997G>C

Select item 14825376346.

rs1482537634 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 11:6197928 (GRCh38)
11:6219158 (GRCh37)
Canonical SPDI:: NC_000011.10:6197927:T:C,NC_000011.10:6197927:T:G
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.6197928T>C, NC_000011.10:g.6197928T>G, NC_000011.9:g.6219158T>C, NC_000011.9:g.6219158T>G

Select item 14801124787.

rs1480112478 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:6199684 (GRCh38)
11:6220914 (GRCh37)
Canonical SPDI:: NC_000011.10:6199683:C:T
Gene:: OR52W1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.6199684C>T, NC_000011.9:g.6220914C>T, NM_001005178.1:c.461C>T, NP_001005178.1:p.Ala154Val

Select item 14798466298.

rs1479846629 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:6199991 (GRCh38)
11:6221221 (GRCh37)
Canonical SPDI:: NC_000011.10:6199990:C:T
Gene:: OR52W1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.6199991C>T, NC_000011.9:g.6221221C>T, NM_001005178.1:c.768C>T

Select item 14783917059.

rs1478391705 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:6199674 (GRCh38)
11:6220904 (GRCh37)
Canonical SPDI:: NC_000011.10:6199673:T:C
Gene:: OR52W1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.6199674T>C, NC_000011.9:g.6220904T>C, NM_001005178.1:c.451T>C

Select item 147810336710.

rs1478103367 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:6200004 (GRCh38)
11:6221234 (GRCh37)
Canonical SPDI:: NC_000011.10:6200003:C:T
Gene:: OR52W1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.6200004C>T, NC_000011.9:g.6221234C>T, NM_001005178.1:c.781C>T, NP_001005178.1:p.Leu261Phe

Select item 147538778711.

rs1475387787 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 11:6198276 (GRCh38)
11:6219506 (GRCh37)
Canonical SPDI:: NC_000011.10:6198275:T:A,NC_000011.10:6198275:T:C
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0./0 (GnomAD)
HGVS:: NC_000011.10:g.6198276T>A, NC_000011.10:g.6198276T>C, NC_000011.9:g.6219506T>A, NC_000011.9:g.6219506T>C

Select item 147427767112.

rs1474277671 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:6199276 (GRCh38)
11:6220506 (GRCh37)
Canonical SPDI:: NC_000011.10:6199275:T:C
Gene:: OR52W1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.6199276T>C, NC_000011.9:g.6220506T>C, NM_001005178.1:c.53T>C, NP_001005178.1:p.Ile18Thr

Select item 147386139013.

rs1473861390 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:6199098 (GRCh38)
11:6220328 (GRCh37)
Canonical SPDI:: NC_000011.10:6199097:C:A
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.6199098C>A, NC_000011.9:g.6220328C>A

Select item 147384801814.

rs1473848018 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 11:6197463 (GRCh38)
11:6218693 (GRCh37)
Canonical SPDI:: NC_000011.10:6197462:T:
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.6197463del, NC_000011.9:g.6218693del

Select item 147321222715.

rs1473212227 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:6198467 (GRCh38)
11:6219697 (GRCh37)
Canonical SPDI:: NC_000011.10:6198466:C:T
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.6198467C>T, NC_000011.9:g.6219697C>T

Select item 147284475116.

rs1472844751 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:6197894 (GRCh38)
11:6219124 (GRCh37)
Canonical SPDI:: NC_000011.10:6197893:A:T
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.6197894A>T, NC_000011.9:g.6219124A>T

Select item 147262131117.

rs1472621311 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:6198871 (GRCh38)
11:6220101 (GRCh37)
Canonical SPDI:: NC_000011.10:6198870:A:G
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.6198871A>G, NC_000011.9:g.6220101A>G

Select item 147207906518.

rs1472079065 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 11:6197599 (GRCh38)
11:6218829 (GRCh37)
Canonical SPDI:: NC_000011.10:6197598:T:
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000054/1 (ALFA)
-=0.000072/19 (TOPMED)
-=0.000078/11 (GnomAD)
-=0.000223/1 (Estonian)
HGVS:: NC_000011.10:g.6197599del, NC_000011.9:g.6218829del

Select item 147134802619.

rs1471348026 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:6197286 (GRCh38)
11:6218517 (GRCh37)
Canonical SPDI:: NC_000011.10:6197286:TTTTTTT:TTTTTTTT
Gene:: OR52W1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
T=0.000083/22 (TOPMED)
T=0.000086/12 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000011.10:g.6197293dup, NC_000011.9:g.6218523dup

Select item 146743046520.

rs1467430465 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:6197850 (GRCh38)
11:6219080 (GRCh37)
Canonical SPDI:: NC_000011.10:6197849:G:A
Gene:: OR52W1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.6197850G>A, NC_000011.9:g.6219080G>A

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