SNP Links for Gene (Select 168002) - SNP

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Select item 14915800721.

rs1491580072 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 6:168312590 (GRCh38)
6:168713270 (GRCh37)
Canonical SPDI:: NC_000006.12:168312589:AT:
Gene:: DACT2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000043/6 (GnomAD)
HGVS:: NC_000006.12:g.168312590_168312591del, NC_000006.11:g.168713270_168713271del

Select item 14915680132.

rs1491568013 has merged into rs1206506328 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACA>-,CA,CACA,CACACACA,CACACACACACACACACA [Show Flanks]
Chromosome:: 6:168311591 (GRCh38)
6:168712271 (GRCh37)
Canonical SPDI:: NC_000006.12:168311584:CACACACACACA:CACACA,NC_000006.12:168311584:CACACACACACA:CACACACA,NC_000006.12:168311584:CACACACACACA:CACACACACA,NC_000006.12:168311584:CACACACACACA:CACACACACACACA,NC_000006.12:168311584:CACACACACACA:CACACACACACACACACACACACA
Gene:: DACT2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACA=0./0 (ALFA)
-=0.00033/4 (TOMMO)
HGVS:: NC_000006.12:g.168311585CA[3], NC_000006.12:g.168311585CA[4], NC_000006.12:g.168311585CA[5], NC_000006.12:g.168311585CA[7], NC_000006.12:g.168311585CA[12], NC_000006.11:g.168712265CA[3], NC_000006.11:g.168712265CA[4], NC_000006.11:g.168712265CA[5], NC_000006.11:g.168712265CA[7], NC_000006.11:g.168712265CA[12]

Select item 14915657703.

rs1491565770 [Homo sapiens]

Variant type:: DEL
Alleles:: GG>- [Show Flanks]
Chromosome:: 6:168320146 (GRCh38)
6:168720826 (GRCh37)
Canonical SPDI:: NC_000006.12:168320145:GG:
Gene:: DACT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000006.12:g.168320146_168320147del, NC_000006.11:g.168720826_168720827del

Select item 14914960534.

rs1491496053 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 6:168320198 (GRCh38)
6:168720879 (GRCh37)
Canonical SPDI:: NC_000006.12:168320198:A:AA
Gene:: DACT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
HGVS:: NC_000006.12:g.168320199dup, NC_000006.11:g.168720879dup

Select item 14914857165.

rs1491485716 has merged into rs1388365238 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACA>-,CA [Show Flanks]
Chromosome:: 6:168311565 (GRCh38)
6:168712245 (GRCh37)
Canonical SPDI:: NC_000006.12:168311560:CACACACA:CACA,NC_000006.12:168311560:CACACACA:CACACA
Gene:: DACT2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACA=0./0 (ALFA)
HGVS:: NC_000006.12:g.168311561CA[2], NC_000006.12:g.168311561CA[3], NC_000006.11:g.168712241CA[2], NC_000006.11:g.168712241CA[3]

Select item 14914797106.

rs1491479710 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->GTATATATATATATATATATATATATATATACAC
Chromosome:: no mapping
Canonical SPDI:

Select item 14914583447.

rs1491458344 [Homo sapiens]

Variant type:: INS
Alleles:: ->CCAT [Show Flanks]
Chromosome:: 6:168311561 (GRCh38)
6:168712242 (GRCh37)
Canonical SPDI:: NC_000006.12:168311561::CCAT
Gene:: DACT2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: CCAT=0.00079/58 (GnomAD)
CCAT=0.00392/7 (Korea1K)
CCAT=0.0045/71 (TOMMO)
HGVS:: NC_000006.12:g.168311561_168311562insCCAT, NC_000006.11:g.168712241_168712242insCCAT

Select item 14914551548.

rs1491455154 has merged into rs1554269708 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATATATATATA>-,TA,TATA,TATATA,TATATATA,TATATATATA,TATATATATATATA,TATATATATATATATA,TATATATATATATATATA,TATATATATATATATATATA,TATATATATATATATATATATA,TATATATATATATATATATATATA,TATATATATATATATATATATATATA,TATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATA [Show Flanks]
Chromosome:: 6:168294592 (GRCh38)
6:168695272 (GRCh37)
Canonical SPDI:: NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:168294577:TATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATA
Gene:: DACT2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATATATATATA=0./0 (ALFA)
TA=0.05518/33 (NorthernSweden)
HGVS:: NC_000006.12:g.168294578TA[7], NC_000006.12:g.168294578TA[8], NC_000006.12:g.168294578TA[9], NC_000006.12:g.168294578TA[10], NC_000006.12:g.168294578TA[11], NC_000006.12:g.168294578TA[12], NC_000006.12:g.168294578TA[14], NC_000006.12:g.168294578TA[15], NC_000006.12:g.168294578TA[16], NC_000006.12:g.168294578TA[17], NC_000006.12:g.168294578TA[18], NC_000006.12:g.168294578TA[19], NC_000006.12:g.168294578TA[20], NC_000006.12:g.168294578TA[21], NC_000006.12:g.168294578TA[22], NC_000006.12:g.168294578TA[23], NC_000006.12:g.168294578TA[24], NC_000006.12:g.168294578TA[25], NC_000006.12:g.168294578TA[26], NC_000006.12:g.168294578TA[27], NC_000006.12:g.168294578TA[28], NC_000006.11:g.168695258TA[7], NC_000006.11:g.168695258TA[8], NC_000006.11:g.168695258TA[9], NC_000006.11:g.168695258TA[10], NC_000006.11:g.168695258TA[11], NC_000006.11:g.168695258TA[12], NC_000006.11:g.168695258TA[14], NC_000006.11:g.168695258TA[15], NC_000006.11:g.168695258TA[16], NC_000006.11:g.168695258TA[17], NC_000006.11:g.168695258TA[18], NC_000006.11:g.168695258TA[19], NC_000006.11:g.168695258TA[20], NC_000006.11:g.168695258TA[21], NC_000006.11:g.168695258TA[22], NC_000006.11:g.168695258TA[23], NC_000006.11:g.168695258TA[24], NC_000006.11:g.168695258TA[25], NC_000006.11:g.168695258TA[26], NC_000006.11:g.168695258TA[27], NC_000006.11:g.168695258TA[28]

Select item 14913572649.

rs1491357264 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATGTGTGT [Show Flanks]
Chromosome:: 6:168294545 (GRCh38)
6:168695226 (GRCh37)
Canonical SPDI:: NC_000006.12:168294545:TATGTGTGT:TATGTGTGTATGTGTGT
Gene:: DACT2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TATGTGTGTATGTGTGT=0./0 (ALFA)
TATGTGTG=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.168294547_168294554dup, NC_000006.11:g.168695227_168695234dup

Select item 149129507910.

rs1491295079 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 6:168320200 (GRCh38)
6:168720880 (GRCh37)
Canonical SPDI:: NC_000006.12:168320197:GAGA:GA
Gene:: DACT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAGA=0./0 (ALFA)
HGVS:: NC_000006.12:g.168320198GA[1], NC_000006.11:g.168720878GA[1]

Select item 149127395711.

rs1491273957 has merged into rs1491102342 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>-,CACA [Show Flanks]
Chromosome:: 6:168311549 (GRCh38)
6:168712229 (GRCh37)
Canonical SPDI:: NC_000006.12:168311540:CACACACACA:CACACACA,NC_000006.12:168311540:CACACACACA:CACACACACACA
Gene:: DACT2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACACACA=0./0 (ALFA)
-=0.01538/77 (1000Genomes)
-=0.02611/1040 (GnomAD)
HGVS:: NC_000006.12:g.168311541CA[4], NC_000006.12:g.168311541CA[6], NC_000006.11:g.168712221CA[4], NC_000006.11:g.168712221CA[6]

Select item 149125246312.

rs1491252463 has merged into rs371814115 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT [Show Flanks]
Chromosome:: 6:168312602 (GRCh38)
6:168713282 (GRCh37)
Canonical SPDI:: NC_000006.12:168312590:TGTGTGTGTGTGT:TGTGTGTGTGT,NC_000006.12:168312590:TGTGTGTGTGTGT:TGTGTGTGTGTGTGT
Gene:: DACT2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGTGTGT=0./0 (ALFA)
TG=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.168312592GT[5], NC_000006.12:g.168312592GT[7], NC_000006.11:g.168713272GT[5], NC_000006.11:g.168713272GT[7]

Select item 149123382513.

rs1491233825 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>-,TATA [Show Flanks]
Chromosome:: 6:168311597 (GRCh38)
6:168712277 (GRCh37)
Canonical SPDI:: NC_000006.12:168311595:ATA:A,NC_000006.12:168311595:ATA:ATATA
Gene:: DACT2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00008/1 (ALFA)
-=0.00226/21 (TOMMO)
-=0.0179/69 (ALSPAC)
-=0.02238/83 (TWINSUK)
HGVS:: NC_000006.12:g.168311597_168311598del, NC_000006.12:g.168311597_168311598dup, NC_000006.11:g.168712277_168712278del, NC_000006.11:g.168712277_168712278dup

Select item 149121307714.

rs1491213077 has merged into rs199631528 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>-,ATAT [Show Flanks]
Chromosome:: 6:168294547 (GRCh38)
6:168695227 (GRCh37)
Canonical SPDI:: NC_000006.12:168294544:ATAT:AT,NC_000006.12:168294544:ATAT:ATATAT
Gene:: DACT2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATAT=0./0 (ALFA)
AT=0.00899/45 (1000Genomes)
HGVS:: NC_000006.12:g.168294545AT[1], NC_000006.12:g.168294545AT[3], NC_000006.11:g.168695225AT[1], NC_000006.11:g.168695225AT[3]

Select item 149115262915.

rs1491152629 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 6:168320146 (GRCh38)
6:168720827 (GRCh37)
Canonical SPDI:: NC_000006.12:168320146::C
Gene:: DACT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000006.12:g.168320146_168320147insC, NC_000006.11:g.168720826_168720827insC

Select item 149111244116.

rs1491112441 has merged into rs145723575 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACACACAC>-,ACAC,ACACAC,ACACACACAC,ACACACACACAC [Show Flanks]
Chromosome:: 6:168311638 (GRCh38)
6:168712318 (GRCh37)
Canonical SPDI:: NC_000006.12:168311632:CACACACACACAC:CACAC,NC_000006.12:168311632:CACACACACACAC:CACACACAC,NC_000006.12:168311632:CACACACACACAC:CACACACACAC,NC_000006.12:168311632:CACACACACACAC:CACACACACACACAC,NC_000006.12:168311632:CACACACACACAC:CACACACACACACACAC
Gene:: DACT2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACAC=0./0 (ALFA)
CA=0.0607/304 (1000Genomes)
CA=0.1/4 (GENOME_DK)
HGVS:: NC_000006.12:g.168311634AC[2], NC_000006.12:g.168311634AC[4], NC_000006.12:g.168311634AC[5], NC_000006.12:g.168311634AC[7], NC_000006.12:g.168311634AC[8], NC_000006.11:g.168712314AC[2], NC_000006.11:g.168712314AC[4], NC_000006.11:g.168712314AC[5], NC_000006.11:g.168712314AC[7], NC_000006.11:g.168712314AC[8]

Select item 149110316217.

rs1491103162 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->AACACACA
Chromosome:: no mapping
Canonical SPDI:

Select item 149110234218.

rs1491102342 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>-,CACA [Show Flanks]
Chromosome:: 6:168311549 (GRCh38)
6:168712229 (GRCh37)
Canonical SPDI:: NC_000006.12:168311540:CACACACACA:CACACACA,NC_000006.12:168311540:CACACACACA:CACACACACACA
Gene:: DACT2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACACACA=0./0 (ALFA)
-=0.01538/77 (1000Genomes)
-=0.02611/1040 (GnomAD)
HGVS:: NC_000006.12:g.168311541CA[4], NC_000006.12:g.168311541CA[6], NC_000006.11:g.168712221CA[4], NC_000006.11:g.168712221CA[6]

Select item 149105631219.

rs1491056312 [Homo sapiens]

Variant type:: DEL
Alleles:: TC>- [Show Flanks]
Chromosome:: 6:168311631 (GRCh38)
6:168712311 (GRCh37)
Canonical SPDI:: NC_000006.12:168311630:TC:
Gene:: DACT2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000008/1 (GnomAD)
-=0.000194/5 (TOMMO)
HGVS:: NC_000006.12:g.168311631_168311632del, NC_000006.11:g.168712311_168712312del

Select item 149102928820.

rs1491029288 has merged into rs61347395 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTT>-,T,TT,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 6:168306619 (GRCh38)
6:168707299 (GRCh37)
Canonical SPDI:: NC_000006.12:168306608:TTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000006.12:168306608:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000006.12:168306608:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000006.12:168306608:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000006.12:168306608:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000006.12:168306608:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000006.12:168306608:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000006.12:168306608:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000006.12:168306608:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000006.12:168306608:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT
Gene:: DACT2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.2718/1008 (TWINSUK)
-=0.2737/1055 (ALSPAC)
-=0.325/13 (GENOME_DK)
-=0.3303/1654 (1000Genomes)
HGVS:: NC_000006.12:g.168306619_168306623del, NC_000006.12:g.168306620_168306623del, NC_000006.12:g.168306621_168306623del, NC_000006.12:g.168306622_168306623del, NC_000006.12:g.168306623del, NC_000006.12:g.168306623dup, NC_000006.12:g.168306622_168306623dup, NC_000006.12:g.168306621_168306623dup, NC_000006.12:g.168306620_168306623dup, NC_000006.12:g.168306615_168306623dup, NC_000006.11:g.168707299_168707303del, NC_000006.11:g.168707300_168707303del, NC_000006.11:g.168707301_168707303del, NC_000006.11:g.168707302_168707303del, NC_000006.11:g.168707303del, NC_000006.11:g.168707303dup, NC_000006.11:g.168707302_168707303dup, NC_000006.11:g.168707301_168707303dup, NC_000006.11:g.168707300_168707303dup, NC_000006.11:g.168707295_168707303dup

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