SNP Links for Gene (Select 2326) - SNP

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Select item 14915766871.

rs1491576687 has merged into rs34529047 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:171256283 (GRCh38)
1:171225422 (GRCh37)
Canonical SPDI:: NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171256272:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000001.11:g.171256283_171256294del, NC_000001.11:g.171256285_171256294del, NC_000001.11:g.171256286_171256294del, NC_000001.11:g.171256287_171256294del, NC_000001.11:g.171256288_171256294del, NC_000001.11:g.171256289_171256294del, NC_000001.11:g.171256290_171256294del, NC_000001.11:g.171256291_171256294del, NC_000001.11:g.171256292_171256294del, NC_000001.11:g.171256293_171256294del, NC_000001.11:g.171256294del, NC_000001.11:g.171256294dup, NC_000001.11:g.171256293_171256294dup, NC_000001.11:g.171256292_171256294dup, NC_000001.11:g.171256291_171256294dup, NC_000001.11:g.171256290_171256294dup, NC_000001.11:g.171256289_171256294dup, NC_000001.10:g.171225422_171225433del, NC_000001.10:g.171225424_171225433del, NC_000001.10:g.171225425_171225433del, NC_000001.10:g.171225426_171225433del, NC_000001.10:g.171225427_171225433del, NC_000001.10:g.171225428_171225433del, NC_000001.10:g.171225429_171225433del, NC_000001.10:g.171225430_171225433del, NC_000001.10:g.171225431_171225433del, NC_000001.10:g.171225432_171225433del, NC_000001.10:g.171225433del, NC_000001.10:g.171225433dup, NC_000001.10:g.171225432_171225433dup, NC_000001.10:g.171225431_171225433dup, NC_000001.10:g.171225430_171225433dup, NC_000001.10:g.171225429_171225433dup, NC_000001.10:g.171225428_171225433dup

Select item 14914893612.

rs1491489361 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:171284187 (GRCh38)
1:171253327 (GRCh37)
Canonical SPDI:: NC_000001.11:171284187:C:CC
Gene:: FMO1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.00014/37 (TOPMED)
C=0.000266/22 (GnomAD)
HGVS:: NC_000001.11:g.171284188dup, NC_000001.10:g.171253327dup, XM_006711242.5:c.*265dup, XM_006711242.4:c.*265dup, XM_006711242.3:c.*265dup, XM_006711242.2:c.*265dup, XM_006711242.1:c.*265dup

Select item 14914585353.

rs1491458535 has merged into rs199581410 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACA>-,CA,CACACACA,CACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA [Show Flanks]
Chromosome:: 1:171264341 (GRCh38)
1:171233480 (GRCh37)
Canonical SPDI:: NC_000001.11:171264335:ACACACACACACACACA:ACACA,NC_000001.11:171264335:ACACACACACACACACA:ACACACA,NC_000001.11:171264335:ACACACACACACACACA:ACACACACACACA,NC_000001.11:171264335:ACACACACACACACACA:ACACACACACACACA,NC_000001.11:171264335:ACACACACACACACACA:ACACACACACACACACACA,NC_000001.11:171264335:ACACACACACACACACA:ACACACACACACACACACACA,NC_000001.11:171264335:ACACACACACACACACA:ACACACACACACACACACACACA
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACA=0./0 (ALFA)
ACAC=0.00739/37 (1000Genomes)
ACAC=0.03333/20 (NorthernSweden)
ACAC=0.05/2 (GENOME_DK)
HGVS:: NC_000001.11:g.171264337CA[2], NC_000001.11:g.171264337CA[3], NC_000001.11:g.171264337CA[6], NC_000001.11:g.171264337CA[7], NC_000001.11:g.171264337CA[9], NC_000001.11:g.171264337CA[10], NC_000001.11:g.171264337CA[11], NC_000001.10:g.171233476CA[2], NC_000001.10:g.171233476CA[3], NC_000001.10:g.171233476CA[6], NC_000001.10:g.171233476CA[7], NC_000001.10:g.171233476CA[9], NC_000001.10:g.171233476CA[10], NC_000001.10:g.171233476CA[11]

Select item 14914451124.

rs1491445112 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 1:171256272 (GRCh38)
1:171225411 (GRCh37)
Canonical SPDI:: NC_000001.11:171256271:CA:
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.0043/51 (ALFA)
HGVS:: NC_000001.11:g.171256272_171256273del, NC_000001.10:g.171225411_171225412del

Select item 14914445275.

rs1491444527 has merged into rs28360426 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA,AAAAAAA [Show Flanks]
Chromosome:: 1:171283318 (GRCh38)
1:171252457 (GRCh37)
Canonical SPDI:: NC_000001.11:171283310:AAAAAAAAA:AAAAAAA,NC_000001.11:171283310:AAAAAAAAA:AAAAAAAA,NC_000001.11:171283310:AAAAAAAAA:AAAAAAAAAA,NC_000001.11:171283310:AAAAAAAAA:AAAAAAAAAAA,NC_000001.11:171283310:AAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:171283310:AAAAAAAAA:AAAAAAAAAAAAAA
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
A=0.0941/54 (NorthernSweden)
A=0.175/7 (GENOME_DK)
HGVS:: NC_000001.11:g.171283318_171283319del, NC_000001.11:g.171283319del, NC_000001.11:g.171283319dup, NC_000001.11:g.171283318_171283319dup, NC_000001.11:g.171283317_171283319dup, NC_000001.11:g.171283315_171283319dup, NC_000001.10:g.171252457_171252458del, NC_000001.10:g.171252458del, NC_000001.10:g.171252458dup, NC_000001.10:g.171252457_171252458dup, NC_000001.10:g.171252456_171252458dup, NC_000001.10:g.171252454_171252458dup

Select item 14914233666.

rs1491423366 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 1:171284188 (GRCh38)
1:171253327 (GRCh37)
Canonical SPDI:: NC_000001.11:171284186:ACA:A
Gene:: FMO1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.00002/2 (GnomAD)
HGVS:: NC_000001.11:g.171284188_171284189del, NC_000001.10:g.171253327_171253328del, XM_006711242.5:c.*265_*266del, XM_006711242.4:c.*265_*266del, XM_006711242.3:c.*265_*266del, XM_006711242.2:c.*265_*266del, XM_006711242.1:c.*265_*266del

Select item 14913933047.

rs1491393304 has merged into rs71561566 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:171260923 (GRCh38)
1:171230062 (GRCh37)
Canonical SPDI:: NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:171260912:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: FMO1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
-=0.000068/18 (TOPMED)
HGVS:: NC_000001.11:g.171260923_171260935del, NC_000001.11:g.171260924_171260935del, NC_000001.11:g.171260925_171260935del, NC_000001.11:g.171260926_171260935del, NC_000001.11:g.171260927_171260935del, NC_000001.11:g.171260929_171260935del, NC_000001.11:g.171260930_171260935del, NC_000001.11:g.171260931_171260935del, NC_000001.11:g.171260932_171260935del, NC_000001.11:g.171260933_171260935del, NC_000001.11:g.171260934_171260935del, NC_000001.11:g.171260935del, NC_000001.11:g.171260935dup, NC_000001.11:g.171260934_171260935dup, NC_000001.11:g.171260933_171260935dup, NC_000001.11:g.171260932_171260935dup, NC_000001.11:g.171260931_171260935dup, NC_000001.11:g.171260930_171260935dup, NC_000001.11:g.171260929_171260935dup, NC_000001.11:g.171260928_171260935dup, NC_000001.11:g.171260927_171260935dup, NC_000001.11:g.171260926_171260935dup, NC_000001.11:g.171260925_171260935dup, NC_000001.11:g.171260924_171260935dup, NC_000001.11:g.171260935_171260936insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000001.10:g.171230062_171230074del, NC_000001.10:g.171230063_171230074del, NC_000001.10:g.171230064_171230074del, NC_000001.10:g.171230065_171230074del, NC_000001.10:g.171230066_171230074del, NC_000001.10:g.171230068_171230074del, NC_000001.10:g.171230069_171230074del, NC_000001.10:g.171230070_171230074del, NC_000001.10:g.171230071_171230074del, NC_000001.10:g.171230072_171230074del, NC_000001.10:g.171230073_171230074del, NC_000001.10:g.171230074del, NC_000001.10:g.171230074dup, NC_000001.10:g.171230073_171230074dup, NC_000001.10:g.171230072_171230074dup, NC_000001.10:g.171230071_171230074dup, NC_000001.10:g.171230070_171230074dup, NC_000001.10:g.171230069_171230074dup, NC_000001.10:g.171230068_171230074dup, NC_000001.10:g.171230067_171230074dup, NC_000001.10:g.171230066_171230074dup, NC_000001.10:g.171230065_171230074dup, NC_000001.10:g.171230064_171230074dup, NC_000001.10:g.171230063_171230074dup, NC_000001.10:g.171230074_171230075insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14912541318.

rs1491254131 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 1:171260913 (GRCh38)
1:171230053 (GRCh37)
Canonical SPDI:: NC_000001.11:171260913::G
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000001.11:g.171260913_171260914insG, NC_000001.10:g.171230052_171230053insG

Select item 14911481769.

rs1491148176 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 1:171283311 (GRCh38)
1:171252451 (GRCh37)
Canonical SPDI:: NC_000001.11:171283311::G
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.171283311_171283312insG, NC_000001.10:g.171252450_171252451insG

Select item 149105833910.

rs1491058339 has merged into rs35698046 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTT>-,TT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 1:171279099 (GRCh38)
1:171248238 (GRCh37)
Canonical SPDI:: NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:171279089:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
T=0.275/11 (GENOME_DK)
HGVS:: NC_000001.11:g.171279099_171279105del, NC_000001.11:g.171279101_171279105del, NC_000001.11:g.171279104_171279105del, NC_000001.11:g.171279105del, NC_000001.11:g.171279105dup, NC_000001.11:g.171279104_171279105dup, NC_000001.11:g.171279103_171279105dup, NC_000001.11:g.171279098_171279105dup, NC_000001.11:g.171279097_171279105dup, NC_000001.11:g.171279096_171279105dup, NC_000001.11:g.171279095_171279105dup, NC_000001.11:g.171279094_171279105dup, NC_000001.11:g.171279105_171279106insTTTTTTTTTTTTTTTTTTT, NC_000001.10:g.171248238_171248244del, NC_000001.10:g.171248240_171248244del, NC_000001.10:g.171248243_171248244del, NC_000001.10:g.171248244del, NC_000001.10:g.171248244dup, NC_000001.10:g.171248243_171248244dup, NC_000001.10:g.171248242_171248244dup, NC_000001.10:g.171248237_171248244dup, NC_000001.10:g.171248236_171248244dup, NC_000001.10:g.171248235_171248244dup, NC_000001.10:g.171248234_171248244dup, NC_000001.10:g.171248233_171248244dup, NC_000001.10:g.171248244_171248245insTTTTTTTTTTTTTTTTTTT

Select item 149099202611.

rs1490992026 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA [Show Flanks]
Chromosome:: 1:171284757 (GRCh38)
1:171253896 (GRCh37)
Canonical SPDI:: NC_000001.11:171284751:AAAAAAA:AAAAA,NC_000001.11:171284751:AAAAAAA:AAAAAA,NC_000001.11:171284751:AAAAAAA:AAAAAAAA
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.000008/2 (TOPMED)
A=0.000015/2 (GnomAD)
-=0.001133/19 (TOMMO)
HGVS:: NC_000001.11:g.171284757_171284758del, NC_000001.11:g.171284758del, NC_000001.11:g.171284758dup, NC_000001.10:g.171253896_171253897del, NC_000001.10:g.171253897del, NC_000001.10:g.171253897dup

Select item 149098046812.

rs1490980468 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 1:171281252 (GRCh38)
1:171250391 (GRCh37)
Canonical SPDI:: NC_000001.11:171281251:A:C,NC_000001.11:171281251:A:G
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000038/10 (TOPMED)
HGVS:: NC_000001.11:g.171281252A>C, NC_000001.11:g.171281252A>G, NC_000001.10:g.171250391A>C, NC_000001.10:g.171250391A>G

Select item 149096630613.

rs1490966306 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:171285913 (GRCh38)
1:171255052 (GRCh37)
Canonical SPDI:: NC_000001.11:171285912:G:T
Gene:: FMO1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.171285913G>T, NC_000001.10:g.171255052G>T, XM_005245038.5:c.*659G>T, XM_005245038.4:c.*659G>T, XM_005245038.3:c.*659G>T, XM_006711241.5:c.*369G>T, XM_006711241.4:c.*369G>T, XM_006711241.3:c.*369G>T, XM_006711241.2:c.*369G>T, XM_006711241.1:c.*369G>T, XM_005245037.4:c.*369G>T, XM_005245037.3:c.*369G>T, XM_005245037.2:c.*369G>T, XM_005245037.1:c.*369G>T, NM_002021.3:c.*369G>T, NM_002021.2:c.*369G>T, NM_002021.1:c.*369G>T, NM_001282693.2:c.*369G>T, NM_001282693.1:c.*369G>T, NM_001282694.2:c.*369G>T, NM_001282694.1:c.*369G>T, NM_001282692.1:c.*369G>T

Select item 149071123814.

rs1490711238 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:171253605 (GRCh38)
1:171222744 (GRCh37)
Canonical SPDI:: NC_000001.11:171253604:T:C
Gene:: FMO1 (Varview), LOC105371611 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.171253605T>C, NC_000001.10:g.171222744T>C

Select item 149056978815.

rs1490569788 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:171268553 (GRCh38)
1:171237692 (GRCh37)
Canonical SPDI:: NC_000001.11:171268552:G:A
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (KOREAN)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.171268553G>A, NC_000001.10:g.171237692G>A

Select item 149053136816.

rs1490531368 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:171253081 (GRCh38)
1:171222220 (GRCh37)
Canonical SPDI:: NC_000001.11:171253080:A:G
Gene:: FMO1 (Varview), LOC105371611 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.171253081A>G, NC_000001.10:g.171222220A>G

Select item 149037911917.

rs1490379119 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:171276590 (GRCh38)
1:171245729 (GRCh37)
Canonical SPDI:: NC_000001.11:171276589:G:T
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000078/11 (GnomAD)
T=0.000151/40 (TOPMED)
HGVS:: NC_000001.11:g.171276590G>T, NC_000001.10:g.171245729G>T

Select item 149037352918.

rs1490373529 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:171264301 (GRCh38)
1:171233440 (GRCh37)
Canonical SPDI:: NC_000001.11:171264300:T:C
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.171264301T>C, NC_000001.10:g.171233440T>C

Select item 149034444519.

rs1490344445 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:171280900 (GRCh38)
1:171250039 (GRCh37)
Canonical SPDI:: NC_000001.11:171280899:C:T
Gene:: FMO1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.171280900C>T, NC_000001.10:g.171250039C>T, XM_005245038.5:c.742C>T, XM_005245038.4:c.742C>T, XM_005245038.3:c.742C>T, XM_005245038.2:c.742C>T, XM_005245038.1:c.742C>T, XM_006711241.5:c.742C>T, XM_006711241.4:c.742C>T, XM_006711241.3:c.742C>T, XM_006711241.2:c.742C>T, XM_006711241.1:c.742C>T, XM_006711242.5:c.742C>T, XM_006711242.4:c.742C>T, XM_006711242.3:c.742C>T, XM_006711242.2:c.742C>T, XM_006711242.1:c.742C>T, XM_005245037.4:c.454C>T, XM_005245037.3:c.454C>T, XM_005245037.2:c.454C>T, XM_005245037.1:c.454C>T, NM_002021.3:c.742C>T, NM_002021.2:c.742C>T, NM_002021.1:c.742C>T, NM_001282693.2:c.742C>T, NM_001282693.1:c.742C>T, NM_001282694.2:c.553C>T, NM_001282694.1:c.553C>T, NM_001282692.1:c.754C>T, XP_005245095.1:p.Pro248Ser, XP_006711304.1:p.Pro248Ser, XP_006711305.1:p.Pro248Ser, XP_005245094.1:p.Pro152Ser, NP_002012.1:p.Pro248Ser, NP_001269622.1:p.Pro248Ser, NP_001269623.1:p.Pro185Ser, NP_001269621.1:p.Pro252Ser

Select item 149027696620.

rs1490276966 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:171283268 (GRCh38)
1:171252408 (GRCh37)
Canonical SPDI:: NC_000001.11:171283268:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAA
Gene:: FMO1 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000001.11:g.171283269_171283291A[23]GAAAAAAAAAAAAAAAAAAAAAAA[1], NC_000001.10:g.171252408_171252430A[23]GAAAAAAAAAAAAAAAAAAAAAAA[1]

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