SNP Links for Gene (Select 283486) - SNP

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Select item 14906761611.

rs1490676161 [Homo sapiens]

Variant type:: DELINS
Alleles:: GACGTCCCCCTCAC>-,GACGTCCCCCTCACGACGTCCCCCTCAC [Show Flanks]
Chromosome:: 13:110813621 (GRCh38)
13:111465968 (GRCh37)
Canonical SPDI:: NC_000013.11:110813601:CTCACGACGTCCCCCTCACGACGTCCCCCTCAC:CTCACGACGTCCCCCTCAC,NC_000013.11:110813601:CTCACGACGTCCCCCTCACGACGTCCCCCTCAC:CTCACGACGTCCCCCTCACGACGTCCCCCTCACGACGTCCCCCTCAC
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCACGACGTCCCCCTCACGACGTCCCCCTCACGACGTCCCCCTCAC=0.00006/1 (ALFA)
-=0.00759/126 (TOMMO)
-=0.00986/18 (Korea1K)
HGVS:: NC_000013.11:g.110813607GACGTCCCCCTCAC[1], NC_000013.11:g.110813607GACGTCCCCCTCAC[3], NC_000013.10:g.111465954GACGTCCCCCTCAC[1], NC_000013.10:g.111465954GACGTCCCCCTCAC[3]

Select item 14903806812.

rs1490380681 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:110813083 (GRCh38)
13:111465430 (GRCh37)
Canonical SPDI:: NC_000013.11:110813082:T:C
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.00641/76 (ALFA)
C=0.00962/28 (KOREAN)
HGVS:: NC_000013.11:g.110813083T>C, NC_000013.10:g.111465430T>C, NR_135280.1:n.2A>G

Select item 14898337643.

rs1489833764 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 13:110813294 (GRCh38)
13:111465641 (GRCh37)
Canonical SPDI:: NC_000013.11:110813293:T:A
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.110813294T>A, NC_000013.10:g.111465641T>A

Select item 14871239564.

rs1487123956 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTCACCACGCTCCCCCCTCACGACGTCCCC>- [Show Flanks]
Chromosome:: 13:110813558 (GRCh38)
13:111465905 (GRCh37)
Canonical SPDI:: NC_000013.11:110813538:CCCCCCTCACGACGTCCCCGTCACCACGCTCCCCCCTCACGACGTCCCC:CCCCCCTCACGACGTCCCC
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CCCCCCTCACGACGTCCCC=0./0 (ALFA)
HGVS:: NC_000013.11:g.110813558_110813587del, NC_000013.10:g.111465905_111465934del

Select item 14864767865.

rs1486476786 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:110810544 (GRCh38)
13:111462891 (GRCh37)
Canonical SPDI:: NC_000013.11:110810543:G:A
Gene:: LINC00567 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.110810544G>A, NC_000013.10:g.111462891G>A, NR_135280.1:n.2541C>T

Select item 14863492546.

rs1486349254 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:110813276 (GRCh38)
13:111465623 (GRCh37)
Canonical SPDI:: NC_000013.11:110813275:C:T
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.110813276C>T, NC_000013.10:g.111465623C>T

Select item 14861580117.

rs1486158011 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:110813036 (GRCh38)
13:111465383 (GRCh37)
Canonical SPDI:: NC_000013.11:110813035:C:T
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.110813036C>T, NC_000013.10:g.111465383C>T, NR_135280.1:n.49G>A

Select item 14860114198.

rs1486011419 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:110809880 (GRCh38)
13:111462227 (GRCh37)
Canonical SPDI:: NC_000013.11:110809879:T:C
Gene:: LINC00567 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.110809880T>C, NC_000013.10:g.111462227T>C, NR_135280.1:n.3205A>G

Select item 14859362659.

rs1485936265 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:110809409 (GRCh38)
13:111461756 (GRCh37)
Canonical SPDI:: NC_000013.11:110809408:C:T
Gene:: LINC00567 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000546/1 (Korea1K)
HGVS:: NC_000013.11:g.110809409C>T, NC_000013.10:g.111461756C>T

Select item 148588327810.

rs1485883278 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:110810831 (GRCh38)
13:111463178 (GRCh37)
Canonical SPDI:: NC_000013.11:110810830:T:G
Gene:: LINC00567 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.110810831T>G, NC_000013.10:g.111463178T>G, NR_135280.1:n.2254A>C

Select item 148515329811.

rs1485153298 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:110814137 (GRCh38)
13:111466484 (GRCh37)
Canonical SPDI:: NC_000013.11:110814136:A:G
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.110814137A>G, NC_000013.10:g.111466484A>G

Select item 148452524612.

rs1484525246 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:110811507 (GRCh38)
13:111463854 (GRCh37)
Canonical SPDI:: NC_000013.11:110811506:A:G
Gene:: LINC00567 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.110811507A>G, NC_000013.10:g.111463854A>G, NR_135280.1:n.1578T>C

Select item 148409147113.

rs1484091471 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:110811944 (GRCh38)
13:111464291 (GRCh37)
Canonical SPDI:: NC_000013.11:110811943:G:A
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.110811944G>A, NC_000013.10:g.111464291G>A, NR_135280.1:n.1141C>T

Select item 148404236614.

rs1484042366 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 13:110810764 (GRCh38)
13:111463111 (GRCh37)
Canonical SPDI:: NC_000013.11:110810763:T:A
Gene:: LINC00567 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.110810764T>A, NC_000013.10:g.111463111T>A, NR_135280.1:n.2321A>T

Select item 148396757015.

rs1483967570 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:110810463 (GRCh38)
13:111462810 (GRCh37)
Canonical SPDI:: NC_000013.11:110810462:T:C
Gene:: LINC00567 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000013.11:g.110810463T>C, NC_000013.10:g.111462810T>C, NR_135280.1:n.2622A>G

Select item 148393962616.

rs1483939626 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:110814445 (GRCh38)
13:111466792 (GRCh37)
Canonical SPDI:: NC_000013.11:110814444:G:T
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.110814445G>T, NC_000013.10:g.111466792G>T

Select item 148318520817.

rs1483185208 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:110815073 (GRCh38)
13:111467420 (GRCh37)
Canonical SPDI:: NC_000013.11:110815072:T:G
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.110815073T>G, NC_000013.10:g.111467420T>G

Select item 148305059318.

rs1483050593 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:110813091 (GRCh38)
13:111465438 (GRCh37)
Canonical SPDI:: NC_000013.11:110813090:C:T
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.110813091C>T, NC_000013.10:g.111465438C>T

Select item 148282354519.

rs1482823545 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:110812807 (GRCh38)
13:111465154 (GRCh37)
Canonical SPDI:: NC_000013.11:110812806:A:T
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.110812807A>T, NC_000013.10:g.111465154A>T, NR_135280.1:n.278T>A

Select item 148205275520.

rs1482052755 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:110814257 (GRCh38)
13:111466604 (GRCh37)
Canonical SPDI:: NC_000013.11:110814256:G:C
Gene:: LINC00567 (Varview), LOC105370362 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000013.11:g.110814257G>C, NC_000013.10:g.111466604G>C

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