SNP Links for Gene (Select 283491) - SNP

Links from Gene

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Select item 14913568671.

rs1491356867 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 13:63742142 (GRCh38)
13:64316275 (GRCh37)
Canonical SPDI:: NC_000013.11:63742141:AG:
Gene:: OR7E156P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/1 (GnomAD)
HGVS:: NC_000013.11:g.63742142_63742143del, NC_000013.10:g.64316275_64316276del

Select item 14913276472.

rs1491327647 has merged into rs552530189 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 13:63739304 (GRCh38)
13:64313437 (GRCh37)
Canonical SPDI:: NC_000013.11:63739303:GGGGGG:GGGGG,NC_000013.11:63739303:GGGGGG:GGGGGGG
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGG=0.00012/2 (ALFA)
-=0.0002/1 (1000Genomes)
-=0.00027/1 (TWINSUK)
-=0.00043/42 (GnomAD)
-=0.00078/3 (ALSPAC)
HGVS:: NC_000013.11:g.63739309del, NC_000013.11:g.63739309dup, NC_000013.10:g.64313442del, NC_000013.10:g.64313442dup, NR_002171.2:n.1352del, NR_002171.2:n.1352dup

Select item 14912773513.

rs1491277351 has merged into rs1486983754 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 13:63742143 (GRCh38)
13:64316276 (GRCh37)
Canonical SPDI:: NC_000013.11:63742142:GGGGGGG:GGGGGG,NC_000013.11:63742142:GGGGGGG:GGGGGGGG
Gene:: OR7E156P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGG=0./0 (ALFA)
-=0.0038/64 (TOMMO)
HGVS:: NC_000013.11:g.63742149del, NC_000013.11:g.63742149dup, NC_000013.10:g.64316282del, NC_000013.10:g.64316282dup

Select item 14912500144.

rs1491250014 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 13:63739121 (GRCh38)
13:64313255 (GRCh37)
Canonical SPDI:: NC_000013.11:63739121:T:TT
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
T=0.000023/3 (GnomAD)
HGVS:: NC_000013.11:g.63739122dup, NC_000013.10:g.64313255dup, NR_002171.2:n.1165dup

Select item 14911703885.

rs1491170388 [Homo sapiens]

Variant type:: DEL
Alleles:: TG>- [Show Flanks]
Chromosome:: 13:63739303 (GRCh38)
13:64313436 (GRCh37)
Canonical SPDI:: NC_000013.11:63739302:TG:
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000013.11:g.63739303_63739304del, NC_000013.10:g.64313436_64313437del, NR_002171.2:n.1346_1347del

Select item 14910655686.

rs1491065568 has merged into rs141958723 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCCCC>-,CC,CCC,CCCC,CCCCCC,CCCCCCC,CCCCCCCC [Show Flanks]
Chromosome:: 13:63739117 (GRCh38)
13:64313250 (GRCh37)
Canonical SPDI:: NC_000013.11:63739111:CCCCCCCCCC:CCCCC,NC_000013.11:63739111:CCCCCCCCCC:CCCCCCC,NC_000013.11:63739111:CCCCCCCCCC:CCCCCCCC,NC_000013.11:63739111:CCCCCCCCCC:CCCCCCCCC,NC_000013.11:63739111:CCCCCCCCCC:CCCCCCCCCCC,NC_000013.11:63739111:CCCCCCCCCC:CCCCCCCCCCCC,NC_000013.11:63739111:CCCCCCCCCC:CCCCCCCCCCCCC
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCCCCCCC=0./0 (ALFA)
-=0.04074/157 (ALSPAC)
-=0.04639/172 (TWINSUK)
-=0.13039/653 (1000Genomes)
HGVS:: NC_000013.11:g.63739117_63739121del, NC_000013.11:g.63739119_63739121del, NC_000013.11:g.63739120_63739121del, NC_000013.11:g.63739121del, NC_000013.11:g.63739121dup, NC_000013.11:g.63739120_63739121dup, NC_000013.11:g.63739119_63739121dup, NC_000013.10:g.64313250_64313254del, NC_000013.10:g.64313252_64313254del, NC_000013.10:g.64313253_64313254del, NC_000013.10:g.64313254del, NC_000013.10:g.64313254dup, NC_000013.10:g.64313253_64313254dup, NC_000013.10:g.64313252_64313254dup, NR_002171.2:n.1160_1164del, NR_002171.2:n.1162_1164del, NR_002171.2:n.1163_1164del, NR_002171.2:n.1164del, NR_002171.2:n.1164dup, NR_002171.2:n.1163_1164dup, NR_002171.2:n.1162_1164dup

Select item 14906516167.

rs1490651616 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 13:63737677 (GRCh38)
13:64311810 (GRCh37)
Canonical SPDI:: NC_000013.11:63737676:A:C,NC_000013.11:63737676:A:T
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.63737677A>C, NC_000013.11:g.63737677A>T, NC_000013.10:g.64311810A>C, NC_000013.10:g.64311810A>T, NR_002171.2:n.243A>C, NR_002171.2:n.243A>T

Select item 14906260238.

rs1490626023 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:63738076 (GRCh38)
13:64312209 (GRCh37)
Canonical SPDI:: NC_000013.11:63738075:C:T
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000013.11:g.63738076C>T, NC_000013.10:g.64312209C>T, NR_002171.2:n.642C>T

Select item 14900323969.

rs1490032396 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:63737121 (GRCh38)
13:64311254 (GRCh37)
Canonical SPDI:: NC_000013.11:63737120:G:A
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.63737121G>A, NC_000013.10:g.64311254G>A

Select item 148988624710.

rs1489886247 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 13:63740157 (GRCh38)
13:64314290 (GRCh37)
Canonical SPDI:: NC_000013.11:63740156:CT:
Gene:: OR7E156P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.63740157_63740158del, NC_000013.10:g.64314290_64314291del, NR_002171.2:n.2200_2201del

Select item 148981610211.

rs1489816102 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:63738608 (GRCh38)
13:64312741 (GRCh37)
Canonical SPDI:: NC_000013.11:63738607:T:C
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.63738608T>C, NC_000013.10:g.64312741T>C

Select item 148957142812.

rs1489571428 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:63741246 (GRCh38)
13:64315379 (GRCh37)
Canonical SPDI:: NC_000013.11:63741245:C:T
Gene:: OR7E156P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
HGVS:: NC_000013.11:g.63741246C>T, NC_000013.10:g.64315379C>T

Select item 148926878313.

rs1489268783 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:63738512 (GRCh38)
13:64312645 (GRCh37)
Canonical SPDI:: NC_000013.11:63738511:C:T
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.63738512C>T, NC_000013.10:g.64312645C>T

Select item 148919007314.

rs1489190073 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 13:63738695 (GRCh38)
13:64312828 (GRCh37)
Canonical SPDI:: NC_000013.11:63738694:T:A,NC_000013.11:63738694:T:C
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000013.11:g.63738695T>A, NC_000013.11:g.63738695T>C, NC_000013.10:g.64312828T>A, NC_000013.10:g.64312828T>C

Select item 148917951815.

rs1489179518 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 13:63737739 (GRCh38)
13:64311872 (GRCh37)
Canonical SPDI:: NC_000013.11:63737738:G:A,NC_000013.11:63737738:G:T
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.63737739G>A, NC_000013.11:g.63737739G>T, NC_000013.10:g.64311872G>A, NC_000013.10:g.64311872G>T, NR_002171.2:n.305G>A, NR_002171.2:n.305G>T

Select item 148891078316.

rs1488910783 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:63736568 (GRCh38)
13:64310701 (GRCh37)
Canonical SPDI:: NC_000013.11:63736567:C:T
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.63736568C>T, NC_000013.10:g.64310701C>T

Select item 148889754517.

rs1488897545 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:63738594 (GRCh38)
13:64312727 (GRCh37)
Canonical SPDI:: NC_000013.11:63738593:G:C
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.63738594G>C, NC_000013.10:g.64312727G>C

Select item 148885454418.

rs1488854544 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 13:63738211 (GRCh38)
13:64312344 (GRCh37)
Canonical SPDI:: NC_000013.11:63738210:G:A,NC_000013.11:63738210:G:C
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000038/10 (TOPMED)
C=0.00005/7 (GnomAD)
HGVS:: NC_000013.11:g.63738211G>A, NC_000013.11:g.63738211G>C, NC_000013.10:g.64312344G>A, NC_000013.10:g.64312344G>C, NR_002171.2:n.777G>A, NR_002171.2:n.777G>C

Select item 148855932319.

rs1488559323 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:63737133 (GRCh38)
13:64311266 (GRCh37)
Canonical SPDI:: NC_000013.11:63737132:A:G
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000013.11:g.63737133A>G, NC_000013.10:g.64311266A>G

Select item 148830845220.

rs1488308452 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 13:63736215 (GRCh38)
13:64310348 (GRCh37)
Canonical SPDI:: NC_000013.11:63736214:C:A,NC_000013.11:63736214:C:G
Gene:: OR7E156P (Varview), LINC00395 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.63736215C>A, NC_000013.11:g.63736215C>G, NC_000013.10:g.64310348C>A, NC_000013.10:g.64310348C>G

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