SNP Links for Gene (Select 338427) - SNP

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Links from Gene

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Select item 14904964401.

rs1490496440 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:24986241 (GRCh38)
15:25231388 (GRCh37)
Canonical SPDI:: NC_000015.10:24986240:C:T
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.24986241C>T, NC_000015.9:g.25231388C>T, NG_002690.1:g.205332C>T, NR_022008.1:n.1382C>T

Select item 14900752712.

rs1490075271 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:24986261 (GRCh38)
15:25231408 (GRCh37)
Canonical SPDI:: NC_000015.10:24986260:A:G
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.24986261A>G, NC_000015.9:g.25231408A>G, NG_002690.1:g.205352A>G, NR_022008.1:n.1402A>G

Select item 14899192313.

rs1489919231 [Homo sapiens]

Variant type:: SNV:
Alleles:: G>A
Chromosome:: no mapping
Canonical SPDI:

Select item 14888977604.

rs1488897760 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:24986068 (GRCh38)
15:25231215 (GRCh37)
Canonical SPDI:: NC_000015.10:24986067:T:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000142/2 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.24986068T>C, NC_000015.9:g.25231215T>C, NG_002690.1:g.205159T>C, NR_022008.1:n.1209T>C

Select item 14888687325.

rs1488868732 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:24986351 (GRCh38)
15:25231498 (GRCh37)
Canonical SPDI:: NC_000015.10:24986350:T:G
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.24986351T>G, NC_000015.9:g.25231498T>G, NG_002690.1:g.205442T>G, NR_022008.1:n.1492T>G

Select item 14869078516.

rs1486907851 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:24985583 (GRCh38)
15:25230730 (GRCh37)
Canonical SPDI:: NC_000015.10:24985582:G:A
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNORD64 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.24985583G>A, NC_000015.9:g.25230730G>A, NG_002690.1:g.204674G>A, NG_042862.1:g.8590G>A, NR_022008.1:n.724G>A

Select item 14845292007.

rs1484529200 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:24986647 (GRCh38)
15:25231794 (GRCh37)
Canonical SPDI:: NC_000015.10:24986646:A:G
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000015.10:g.24986647A>G, NC_000015.9:g.25231794A>G, NG_002690.1:g.205738A>G, NR_022008.1:n.1788A>G

Select item 14844015708.

rs1484401570 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:24986170 (GRCh38)
15:25231317 (GRCh37)
Canonical SPDI:: NC_000015.10:24986169:C:A
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.24986170C>A, NC_000015.9:g.25231317C>A, NG_002690.1:g.205261C>A, NR_022008.1:n.1311C>A

Select item 14837080529.

rs1483708052 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:24985531 (GRCh38)
15:25230678 (GRCh37)
Canonical SPDI:: NC_000015.10:24985530:T:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNORD64 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.24985531T>C, NC_000015.9:g.25230678T>C, NG_002690.1:g.204622T>C, NG_042862.1:g.8538T>C, NR_022008.1:n.672T>C

Select item 148339118810.

rs1483391188 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:24985136 (GRCh38)
15:25230283 (GRCh37)
Canonical SPDI:: NC_000015.10:24985135:A:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNORD64 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0./0 (GnomAD)
C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.24985136A>C, NC_000015.9:g.25230283A>C, NG_002690.1:g.204227A>C, NG_042862.1:g.8143A>C, NR_022008.1:n.277A>C, NR_001294.1:n.37A>C

Select item 148205886211.

rs1482058862 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:24987444 (GRCh38)
15:25232591 (GRCh37)
Canonical SPDI:: NC_000015.10:24987443:A:G
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.24987444A>G, NC_000015.9:g.25232591A>G, NG_002690.1:g.206535A>G, NR_022008.1:n.2585A>G

Select item 148074065012.

rs1480740650 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 15:24985747 (GRCh38)
15:25230894 (GRCh37)
Canonical SPDI:: NC_000015.10:24985746:A:C,NC_000015.10:24985746:A:T
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.24985747A>C, NC_000015.10:g.24985747A>T, NC_000015.9:g.25230894A>C, NC_000015.9:g.25230894A>T, NG_002690.1:g.204838A>C, NG_002690.1:g.204838A>T, NG_042862.1:g.8754A>C, NG_042862.1:g.8754A>T, NR_022008.1:n.888A>C, NR_022008.1:n.888A>T

Select item 148061534313.

rs1480615343 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:24986066 (GRCh38)
15:25231213 (GRCh37)
Canonical SPDI:: NC_000015.10:24986065:C:T
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.24986066C>T, NC_000015.9:g.25231213C>T, NG_002690.1:g.205157C>T, NR_022008.1:n.1207C>T

Select item 147993858414.

rs1479938584 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:24986095 (GRCh38)
15:25231242 (GRCh37)
Canonical SPDI:: NC_000015.10:24986094:T:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.24986095T>C, NC_000015.9:g.25231242T>C, NG_002690.1:g.205186T>C, NR_022008.1:n.1236T>C

Select item 147983033515.

rs1479830335 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:24985321 (GRCh38)
15:25230468 (GRCh37)
Canonical SPDI:: NC_000015.10:24985320:C:A,NC_000015.10:24985320:C:T
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNORD64 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000106/2 (TOMMO)
HGVS:: NC_000015.10:g.24985321C>A, NC_000015.10:g.24985321C>T, NC_000015.9:g.25230468C>A, NC_000015.9:g.25230468C>T, NG_002690.1:g.204412C>A, NG_002690.1:g.204412C>T, NG_042862.1:g.8328C>A, NG_042862.1:g.8328C>T, NR_022008.1:n.462C>A, NR_022008.1:n.462C>T

Select item 147886096416.

rs1478860964 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:24986609 (GRCh38)
15:25231756 (GRCh37)
Canonical SPDI:: NC_000015.10:24986608:T:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.24986609T>C, NC_000015.9:g.25231756T>C, NG_002690.1:g.205700T>C, NR_022008.1:n.1750T>C

Select item 147649400617.

rs1476494006 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:24985260 (GRCh38)
15:25230407 (GRCh37)
Canonical SPDI:: NC_000015.10:24985259:G:A,NC_000015.10:24985259:G:T
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNORD64 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000015.10:g.24985260G>A, NC_000015.10:g.24985260G>T, NC_000015.9:g.25230407G>A, NC_000015.9:g.25230407G>T, NG_002690.1:g.204351G>A, NG_002690.1:g.204351G>T, NG_042862.1:g.8267G>A, NG_042862.1:g.8267G>T, NR_022008.1:n.401G>A, NR_022008.1:n.401G>T

Select item 147461037618.

rs1474610376 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:24986152 (GRCh38)
15:25231299 (GRCh37)
Canonical SPDI:: NC_000015.10:24986151:G:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.24986152G>C, NC_000015.9:g.25231299G>C, NG_002690.1:g.205243G>C, NR_022008.1:n.1293G>C

Select item 147422230519.

rs1474222305 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:24985113 (GRCh38)
15:25230260 (GRCh37)
Canonical SPDI:: NC_000015.10:24985112:G:A
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNORD64 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.24985113G>A, NC_000015.9:g.25230260G>A, NG_002690.1:g.204204G>A, NG_042862.1:g.8120G>A, NR_022008.1:n.254G>A, NR_001294.1:n.14G>A

Select item 147411898920.

rs1474118989 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 15:24986311 (GRCh38)
15:25231458 (GRCh37)
Canonical SPDI:: NC_000015.10:24986309:TAT:T
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.24986311_24986312del, NC_000015.9:g.25231458_25231459del, NG_002690.1:g.205402_205403del, NR_022008.1:n.1452_1453del