SNP Links for Gene (Select 399706) - SNP

Links from Gene

Items: 1 to 20 of 2097

<< First< Prev

Page of 105

Next >Last >>

Select item 14915833981.

rs1491583398 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCC>-,TCCTCC [Show Flanks]
Chromosome:: 10:1158385 (GRCh38)
10:1204325 (GRCh37)
Canonical SPDI:: NC_000010.11:1158382:CCTCC:CC,NC_000010.11:1158382:CCTCC:CCTCCTCC
Gene:: LINC00200 (Varview), LOC105376344 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CCTCCTCC=0./0 (ALFA)
CCT=0.00071/5 (GnomAD)
HGVS:: NC_000010.11:g.1158385_1158387del, NC_000010.11:g.1158385_1158387dup, NC_000010.10:g.1204325_1204327del, NC_000010.10:g.1204325_1204327dup

Select item 14912673062.

rs1491267306 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>- [Show Flanks]
Chromosome:: 10:1158383 (GRCh38)
10:1204323 (GRCh37)
Canonical SPDI:: NC_000010.11:1158381:CCC:C
Gene:: LINC00200 (Varview), LOC105376344 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.0089/62 (GnomAD)
HGVS:: NC_000010.11:g.1158383_1158384del, NC_000010.10:g.1204323_1204324del

Select item 14909519413.

rs1490951941 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:1159450 (GRCh38)
10:1205390 (GRCh37)
Canonical SPDI:: NC_000010.11:1159449:C:G
Gene:: LINC00200 (Varview), LOC105376344 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.1159450C>G, NC_000010.10:g.1205390C>G, XR_930532.3:n.313G>C, XR_930535.3:n.313G>C, XR_930533.3:n.313G>C, XR_007062031.1:n.313G>C

Select item 14905566054.

rs1490556605 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:1159711 (GRCh38)
10:1205651 (GRCh37)
Canonical SPDI:: NC_000010.11:1159710:G:A
Gene:: LINC00200 (Varview), LOC105376344 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000010.11:g.1159711G>A, NC_000010.10:g.1205651G>A, XR_930532.3:n.52C>T, XR_930535.3:n.52C>T, XR_930533.3:n.52C>T, XR_007062031.1:n.52C>T

Select item 14903407695.

rs1490340769 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:1164756 (GRCh38)
10:1210696 (GRCh37)
Canonical SPDI:: NC_000010.11:1164755:A:G
Gene:: LINC00200 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.1164756A>G, NC_000010.10:g.1210696A>G

Select item 14897920276.

rs1489792027 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:1165130 (GRCh38)
10:1211070 (GRCh37)
Canonical SPDI:: NC_000010.11:1165129:G:A
Gene:: LINC00200 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.1165130G>A, NC_000010.10:g.1211070G>A

Select item 14897835417.

rs1489783541 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:1158583 (GRCh38)
10:1204523 (GRCh37)
Canonical SPDI:: NC_000010.11:1158582:C:T
Gene:: LINC00200 (Varview), LOC105376344 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (KOREAN)
T=0.000011/3 (TOPMED)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000010.11:g.1158583C>T, NC_000010.10:g.1204523C>T

Select item 14896826718.

rs1489682671 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:1163481 (GRCh38)
10:1209421 (GRCh37)
Canonical SPDI:: NC_000010.11:1163480:C:T
Gene:: LINC00200 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000546/1 (Korea1K)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000010.11:g.1163481C>T, NC_000010.10:g.1209421C>T, NR_015376.2:n.1243C>T, NM_001010910.1:c.*868C>T

Select item 14896004679.

rs1489600467 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:1163526 (GRCh38)
10:1209466 (GRCh37)
Canonical SPDI:: NC_000010.11:1163525:T:C
Gene:: LINC00200 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.1163526T>C, NC_000010.10:g.1209466T>C, NR_015376.2:n.1288T>C, NM_001010910.1:c.*913T>C

Select item 148947576810.

rs1489475768 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 10:1158389 (GRCh38)
10:1204329 (GRCh37)
Canonical SPDI:: NC_000010.11:1158388:T:
Gene:: LINC00200 (Varview), LOC105376344 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.00018/3 (TOMMO)
HGVS:: NC_000010.11:g.1158389del, NC_000010.10:g.1204329del

Select item 148926063311.

rs1489260633 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:1159180 (GRCh38)
10:1205120 (GRCh37)
Canonical SPDI:: NC_000010.11:1159179:C:A
Gene:: LINC00200 (Varview), LOC105376344 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.1159180C>A, NC_000010.10:g.1205120C>A, XR_930532.3:n.583G>T, XR_930532.2:n.6G>T, XR_930532.1:n.6G>T, XR_930533.3:n.583G>T, XR_930533.2:n.6G>T, XR_930533.1:n.6G>T, XR_007062031.1:n.583G>T

Select item 148921534112.

rs1489215341 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:1163080 (GRCh38)
10:1209020 (GRCh37)
Canonical SPDI:: NC_000010.11:1163079:C:T
Gene:: LINC00200 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.1163080C>T, NC_000010.10:g.1209020C>T, NR_015376.2:n.842C>T, NM_001010910.1:c.*467C>T

Select item 148862126013.

rs1488621260 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:1163316 (GRCh38)
10:1209256 (GRCh37)
Canonical SPDI:: NC_000010.11:1163315:A:C
Gene:: LINC00200 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.1163316A>C, NC_000010.10:g.1209256A>C, NR_015376.2:n.1078A>C, NM_001010910.1:c.*703A>C

Select item 148823923914.

rs1488239239 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:1162075 (GRCh38)
10:1208015 (GRCh37)
Canonical SPDI:: NC_000010.11:1162074:G:A
Gene:: LINC00200 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000023/6 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000010.11:g.1162075G>A, NC_000010.10:g.1208015G>A

Select item 148819687915.

rs1488196879 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:1163826 (GRCh38)
10:1209766 (GRCh37)
Canonical SPDI:: NC_000010.11:1163825:A:T
Gene:: LINC00200 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.1163826A>T, NC_000010.10:g.1209766A>T, NR_015376.2:n.1588A>T, NM_001010910.1:c.*1213A>T

Select item 148781505416.

rs1487815054 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 10:1157994 (GRCh38)
10:1203934 (GRCh37)
Canonical SPDI:: NC_000010.11:1157993:G:C,NC_000010.11:1157993:G:T
Gene:: LINC00200 (Varview), LOC105376344 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.1157994G>C, NC_000010.11:g.1157994G>T, NC_000010.10:g.1203934G>C, NC_000010.10:g.1203934G>T, XR_930532.3:n.739C>G, XR_930532.3:n.739C>A, XR_930532.2:n.162C>G, XR_930532.2:n.162C>A, XR_930532.1:n.162C>G, XR_930532.1:n.162C>A, XR_930535.3:n.574C>G, XR_930535.3:n.574C>A, XR_930535.2:n.159C>G, XR_930535.2:n.159C>A, XR_930535.1:n.159C>G, XR_930535.1:n.159C>A, XR_930533.3:n.739C>G, XR_930533.3:n.739C>A, XR_930533.2:n.162C>G, XR_930533.2:n.162C>A, XR_930533.1:n.162C>G, XR_930533.1:n.162C>A

Select item 148703061717.

rs1487030617 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TGTGCTCGTGAGCGTGGACCTCTGCTAGGCGATGT
Chromosome:: no mapping
Canonical SPDI:

Select item 148696934118.

rs1486969341 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:1159190 (GRCh38)
10:1205130 (GRCh37)
Canonical SPDI:: NC_000010.11:1159189:A:G
Gene:: LINC00200 (Varview), LOC105376344 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000010.11:g.1159190A>G, NC_000010.10:g.1205130A>G, XR_930532.3:n.573T>C, XR_930533.3:n.573T>C, XR_007062031.1:n.573T>C

Select item 148671275519.

rs1486712755 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:1163377 (GRCh38)
10:1209317 (GRCh37)
Canonical SPDI:: NC_000010.11:1163376:C:T
Gene:: LINC00200 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.00003/8 (TOPMED)
HGVS:: NC_000010.11:g.1163377C>T, NC_000010.10:g.1209317C>T, NR_015376.2:n.1139C>T, NM_001010910.1:c.*764C>T

Select item 148668807720.

rs1486688077 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:1162488 (GRCh38)
10:1208428 (GRCh37)
Canonical SPDI:: NC_000010.11:1162487:C:G
Gene:: LINC00200 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000010.11:g.1162488C>G, NC_000010.10:g.1208428C>G

<< First< Prev

Page of 105

Next >Last >>

dbSNP

Result Filters

Validation Status

Function Class

Variation Class

Annotation

Global MAF

Custom range

Additional filters

Display Settings:

Send to:

Links from Gene

Items: 1 to 20 of 2097

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity