SNP Links for Gene (Select 407015) - SNP

Links from Gene

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Select item 14894044201.

rs1489404420 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 3:37968577 (GRCh38)
3:38010068 (GRCh37)
Canonical SPDI:: NC_000003.12:37968576:A:C,NC_000003.12:37968576:A:G
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.37968577A>C, NC_000003.12:g.37968577A>G, NC_000003.11:g.38010068A>C, NC_000003.11:g.38010068A>G

Select item 14881611172.

rs1488161117 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 3:37968351 (GRCh38)
3:38009842 (GRCh37)
Canonical SPDI:: NC_000003.12:37968350:CCC:CC
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.37968353del, NC_000003.11:g.38009844del

Select item 14881287203.

rs1488128720 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:37968969 (GRCh38)
3:38010460 (GRCh37)
Canonical SPDI:: NC_000003.12:37968968:C:T
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.37968969C>T, NC_000003.11:g.38010460C>T

Select item 14876977224.

rs1487697722 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:37967994 (GRCh38)
3:38009485 (GRCh37)
Canonical SPDI:: NC_000003.12:37967993:A:G
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000342/1 (KOREAN)
G=0.001699/28 (TOMMO)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000003.12:g.37967994A>G, NC_000003.11:g.38009485A>G

Select item 14864598665.

rs1486459866 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:37969494 (GRCh38)
3:38010985 (GRCh37)
Canonical SPDI:: NC_000003.12:37969493:G:A
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000003.12:g.37969494G>A, NC_000003.11:g.38010985G>A

Select item 14861032926.

rs1486103292 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:37969614 (GRCh38)
3:38011105 (GRCh37)
Canonical SPDI:: NC_000003.12:37969613:G:A
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000003.12:g.37969614G>A, NC_000003.11:g.38011105G>A

Select item 14846241687.

rs1484624168 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:37968581 (GRCh38)
3:38010072 (GRCh37)
Canonical SPDI:: NC_000003.12:37968580:A:G
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000029/4 (GnomAD)
G=0.000035/1 (TOMMO)
HGVS:: NC_000003.12:g.37968581A>G, NC_000003.11:g.38010072A>G

Select item 14828431668.

rs1482843166 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:37968587 (GRCh38)
3:38010078 (GRCh37)
Canonical SPDI:: NC_000003.12:37968586:T:C
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.37968587T>C, NC_000003.11:g.38010078T>C

Select item 14788357669.

rs1478835766 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:37967625 (GRCh38)
3:38009116 (GRCh37)
Canonical SPDI:: NC_000003.12:37967624:G:A
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.37967625G>A, NC_000003.11:g.38009116G>A

Select item 147717750710.

rs1477177507 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 3:37968100 (GRCh38)
3:38009591 (GRCh37)
Canonical SPDI:: NC_000003.12:37968099:G:A,NC_000003.12:37968099:G:C
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000003.12:g.37968100G>A, NC_000003.12:g.37968100G>C, NC_000003.11:g.38009591G>A, NC_000003.11:g.38009591G>C

Select item 147695281011.

rs1476952810 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:37969573 (GRCh38)
3:38011064 (GRCh37)
Canonical SPDI:: NC_000003.12:37969572:G:A
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.37969573G>A, NC_000003.11:g.38011064G>A

Select item 147665401612.

rs1476654016 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:37969268 (GRCh38)
3:38010759 (GRCh37)
Canonical SPDI:: NC_000003.12:37969267:T:C
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.37969268T>C, NC_000003.11:g.38010759T>C

Select item 147603382613.

rs1476033826 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:37967899 (GRCh38)
3:38009390 (GRCh37)
Canonical SPDI:: NC_000003.12:37967898:A:C
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency
MAF:: C=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.37967899A>C, NC_000003.11:g.38009390A>C

Select item 147197796614.

rs1471977966 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:37969232 (GRCh38)
3:38010723 (GRCh37)
Canonical SPDI:: NC_000003.12:37969231:T:G
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.37969232T>G, NC_000003.11:g.38010723T>G

Select item 147024096315.

rs1470240963 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:37968287 (GRCh38)
3:38009778 (GRCh37)
Canonical SPDI:: NC_000003.12:37968286:C:T
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.37968287C>T, NC_000003.11:g.38009778C>T

Select item 147000249516.

rs1470002495 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:37968008 (GRCh38)
3:38009499 (GRCh37)
Canonical SPDI:: NC_000003.12:37968007:G:A
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000003.12:g.37968008G>A, NC_000003.11:g.38009499G>A

Select item 146764347117.

rs1467643471 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:37967718 (GRCh38)
3:38009209 (GRCh37)
Canonical SPDI:: NC_000003.12:37967717:T:C
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.37967718T>C, NC_000003.11:g.38009209T>C

Select item 146751020318.

rs1467510203 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:37968370 (GRCh38)
3:38009861 (GRCh37)
Canonical SPDI:: NC_000003.12:37968369:G:A
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000012/1 (GnomAD_exomes)
A=0.000026/7 (TOPMED)
HGVS:: NC_000003.12:g.37968370G>A, NC_000003.11:g.38009861G>A

Select item 146589060419.

rs1465890604 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 3:37968541 (GRCh38)
3:38010032 (GRCh37)
Canonical SPDI:: NC_000003.12:37968540:A:T
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.37968541A>T, NC_000003.11:g.38010032A>T

Select item 146537515720.

rs1465375157 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:37968052 (GRCh38)
3:38009543 (GRCh37)
Canonical SPDI:: NC_000003.12:37968051:T:G
Gene:: CTDSPL (Varview), MIR26A1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.37968052T>G, NC_000003.11:g.38009543T>G

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