SNP Links for Gene (Select 442523) - SNP

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Items: 1 to 20 of 1802

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Select item 14914517941.

rs1491451794 [Homo sapiens]

Variant type:: INS
Alleles:: ->TTA [Show Flanks]
Chromosome:: 7:90122458 (GRCh38)
7:89751773 (GRCh37)
Canonical SPDI:: NC_000007.14:90122458::TTA
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTA=0.0002/1 (ALFA)
HGVS:: NC_000007.14:g.90122458_90122459insTTA, NC_000007.13:g.89751772_89751773insTTA

Select item 14912043382.

rs1491204338 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 7:90119042 (GRCh38)
7:89748356 (GRCh37)
Canonical SPDI:: NC_000007.14:90119038:GAGAG:GAG
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAG=0./0 (ALFA)
HGVS:: NC_000007.14:g.90119040AG[1], NC_000007.13:g.89748354AG[1]

Select item 14911245953.

rs1491124595 [Homo sapiens]

Variant type:: DEL
Alleles:: TG>- [Show Flanks]
Chromosome:: 7:90122458 (GRCh38)
7:89751772 (GRCh37)
Canonical SPDI:: NC_000007.14:90122457:TG:
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.11094/1316 (ALFA)
-=0.00977/164 (TOMMO)
HGVS:: NC_000007.14:g.90122458_90122459del, NC_000007.13:g.89751772_89751773del

Select item 14908896694.

rs1490889669 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:90124050 (GRCh38)
7:89753364 (GRCh37)
Canonical SPDI:: NC_000007.14:90124049:A:G
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000066/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.90124050A>G, NC_000007.13:g.89753364A>G

Select item 14908429305.

rs1490842930 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:90121821 (GRCh38)
7:89751135 (GRCh37)
Canonical SPDI:: NC_000007.14:90121820:A:T
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000042/11 (TOPMED)
T=0.000354/6 (TOMMO)
T=0.001027/3 (KOREAN)
T=0.001092/2 (Korea1K)
HGVS:: NC_000007.14:g.90121821A>T, NC_000007.13:g.89751135A>T

Select item 14907839816.

rs1490783981 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 7:90124062 (GRCh38)
7:89753377 (GRCh37)
Canonical SPDI:: NC_000007.14:90124062:TTTTTTT:TTTTTTTT
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTTTTTTT=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.90124069dup, NC_000007.13:g.89753383dup

Select item 14902912837.

rs1490291283 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:90123617 (GRCh38)
7:89752931 (GRCh37)
Canonical SPDI:: NC_000007.14:90123616:G:A,NC_000007.14:90123616:G:C
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.90123617G>A, NC_000007.14:g.90123617G>C, NC_000007.13:g.89752931G>A, NC_000007.13:g.89752931G>C

Select item 14902763678.

rs1490276367 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 7:90124643 (GRCh38)
7:89753957 (GRCh37)
Canonical SPDI:: NC_000007.14:90124642:A:
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.90124643del, NC_000007.13:g.89753957del, NR_003551.1:n.1061del

Select item 14900251099.

rs1490025109 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:90120769 (GRCh38)
7:89750083 (GRCh37)
Canonical SPDI:: NC_000007.14:90120768:T:C
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00004/1 (TOMMO)
HGVS:: NC_000007.14:g.90120769T>C, NC_000007.13:g.89750083T>C

Select item 148991139510.

rs1489911395 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:90121826 (GRCh38)
7:89751140 (GRCh37)
Canonical SPDI:: NC_000007.14:90121825:A:G
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.90121826A>G, NC_000007.13:g.89751140A>G

Select item 148989596311.

rs1489895963 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:90122083 (GRCh38)
7:89751397 (GRCh37)
Canonical SPDI:: NC_000007.14:90122082:T:C
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.90122083T>C, NC_000007.13:g.89751397T>C, NR_003551.1:n.483T>C

Select item 148985972112.

rs1489859721 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:90119646 (GRCh38)
7:89748960 (GRCh37)
Canonical SPDI:: NC_000007.14:90119645:G:C
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000224/1 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.90119646G>C, NC_000007.13:g.89748960G>C, NR_003551.1:n.247G>C

Select item 148980027213.

rs1489800272 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 7:90123186 (GRCh38)
7:89752501 (GRCh37)
Canonical SPDI:: NC_000007.14:90123186:A:AA
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000177/3 (TOMMO)
HGVS:: NC_000007.14:g.90123187dup, NC_000007.13:g.89752501dup

Select item 148942260914.

rs1489422609 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:90123000 (GRCh38)
7:89752314 (GRCh37)
Canonical SPDI:: NC_000007.14:90122999:C:G
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.90123000C>G, NC_000007.13:g.89752314C>G

Select item 148878074715.

rs1488780747 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 7:90119541 (GRCh38)
7:89748856 (GRCh37)
Canonical SPDI:: NC_000007.14:90119541:AAAAAA:AAAAAAA
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.90119547dup, NC_000007.13:g.89748861dup, NR_003551.1:n.148dup

Select item 148769939716.

rs1487699397 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:90124301 (GRCh38)
7:89753615 (GRCh37)
Canonical SPDI:: NC_000007.14:90124300:A:G
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000007.14:g.90124301A>G, NC_000007.13:g.89753615A>G, NR_003551.1:n.719A>G

Select item 148687696817.

rs1486876968 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:90121744 (GRCh38)
7:89751058 (GRCh37)
Canonical SPDI:: NC_000007.14:90121743:A:G
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.90121744A>G, NC_000007.13:g.89751058A>G

Select item 148662624118.

rs1486626241 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:90124776 (GRCh38)
7:89754090 (GRCh37)
Canonical SPDI:: NC_000007.14:90124775:T:A
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.90124776T>A, NC_000007.13:g.89754090T>A, NR_003551.1:n.1194T>A

Select item 148624657119.

rs1486246571 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 7:90120583 (GRCh38)
7:89749897 (GRCh37)
Canonical SPDI:: NC_000007.14:90120582:G:C,NC_000007.14:90120582:G:T
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.90120583G>C, NC_000007.14:g.90120583G>T, NC_000007.13:g.89749897G>C, NC_000007.13:g.89749897G>T

Select item 148589682920.

rs1485896829 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 7:90121179 (GRCh38)
7:89750493 (GRCh37)
Canonical SPDI:: NC_000007.14:90121178:C:A,NC_000007.14:90121178:C:G,NC_000007.14:90121178:C:T
Gene:: DPY19L2P4 (Varview), STEAP2-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.00006/1 (TOMMO)
HGVS:: NC_000007.14:g.90121179C>A, NC_000007.14:g.90121179C>G, NC_000007.14:g.90121179C>T, NC_000007.13:g.89750493C>A, NC_000007.13:g.89750493C>G, NC_000007.13:g.89750493C>T

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