SNP Links for Gene (Select 574478) - SNP

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Select item 14902379531.

rs1490237953 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCAT>- [Show Flanks]
Chromosome:: 19:53710924 (GRCh38)
19:54214178 (GRCh37)
Canonical SPDI:: NC_000019.10:53710921:ATGCAT:AT
Gene:: MIR524 (Varview), MIR517A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AT=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.53710924_53710927del, NC_000019.9:g.54214178_54214181del

Select item 14897292522.

rs1489729252 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GA [Show Flanks]
Chromosome:: 19:53711479 (GRCh38)
19:54214734 (GRCh37)
Canonical SPDI:: NC_000019.10:53711479:A:AGA
Gene:: MIR524 (Varview), MIR517A (Varview), MIR519D (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0.000071/1 (ALFA)
AG=0.000011/3 (TOPMED)
AG=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.53711480_53711481insGA, NC_000019.9:g.54214734_54214735insGA

Select item 14894328813.

rs1489432881 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:53709507 (GRCh38)
19:54212761 (GRCh37)
Canonical SPDI:: NC_000019.10:53709506:C:T
Gene:: MIR524 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.53709507C>T, NC_000019.9:g.54212761C>T

Select item 14841288684.

rs1484128868 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:53710415 (GRCh38)
19:54213669 (GRCh37)
Canonical SPDI:: NC_000019.10:53710414:T:A
Gene:: MIR524 (Varview), MIR517A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.53710415T>A, NC_000019.9:g.54213669T>A

Select item 14829190225.

rs1482919022 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:53710711 (GRCh38)
19:54213965 (GRCh37)
Canonical SPDI:: NC_000019.10:53710710:T:C
Gene:: MIR524 (Varview), MIR517A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.53710711T>C, NC_000019.9:g.54213965T>C

Select item 14827669726.

rs1482766972 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:53709938 (GRCh38)
19:54213192 (GRCh37)
Canonical SPDI:: NC_000019.10:53709937:C:G
Gene:: MIR524 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.53709938C>G, NC_000019.9:g.54213192C>G

Select item 14824921737.

rs1482492173 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:53709589 (GRCh38)
19:54212843 (GRCh37)
Canonical SPDI:: NC_000019.10:53709588:T:G
Gene:: MIR524 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.53709589T>G, NC_000019.9:g.54212843T>G

Select item 14820148528.

rs1482014852 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:53709407 (GRCh38)
19:54212661 (GRCh37)
Canonical SPDI:: NC_000019.10:53709406:G:A
Gene:: MIR524 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000447/2 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000446/2 (Estonian)
HGVS:: NC_000019.10:g.53709407G>A, NC_000019.9:g.54212661G>A

Select item 14819498189.

rs1481949818 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:53710543 (GRCh38)
19:54213797 (GRCh37)
Canonical SPDI:: NC_000019.10:53710542:T:C
Gene:: MIR524 (Varview), MIR517A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.53710543T>C, NC_000019.9:g.54213797T>C

Select item 148123400110.

rs1481234001 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:53709728 (GRCh38)
19:54212982 (GRCh37)
Canonical SPDI:: NC_000019.10:53709727:G:A
Gene:: MIR524 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.53709728G>A, NC_000019.9:g.54212982G>A

Select item 148065185511.

rs1480651855 has merged into rs1031933940 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 19:53710532 (GRCh38)
19:54213786 (GRCh37)
Canonical SPDI:: NC_000019.10:53710531:TTTTTTTT:TTTTTTT,NC_000019.10:53710531:TTTTTTTT:TTTTTTTTT
Gene:: MIR524 (Varview), MIR517A (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000019.10:g.53710539del, NC_000019.10:g.53710539dup, NC_000019.9:g.54213793del, NC_000019.9:g.54213793dup

Select item 148000405912.

rs1480004059 has merged into rs199889445 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCT>-,CT [Show Flanks]
Chromosome:: 19:53711289 (GRCh38)
19:54214543 (GRCh37)
Canonical SPDI:: NC_000019.10:53711285:TCTCTCT:TCT,NC_000019.10:53711285:TCTCTCT:TCTCT
Gene:: MIR524 (Varview), MIR517A (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCT=0.00397/72 (ALFA)
-=0.00578/29 (1000Genomes)
-=0.00667/4 (NorthernSweden)
-=0.01629/73 (Estonian)
-=0.01672/62 (TWINSUK)
-=0.01946/75 (ALSPAC)
-=0.02806/28 (GoNL)
HGVS:: NC_000019.10:g.53711287CT[1], NC_000019.10:g.53711287CT[2], NC_000019.9:g.54214541CT[1], NC_000019.9:g.54214541CT[2]

Select item 147702112813.

rs1477021128 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:53709360 (GRCh38)
19:54212614 (GRCh37)
Canonical SPDI:: NC_000019.10:53709359:T:C
Gene:: MIR524 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000019.10:g.53709360T>C, NC_000019.9:g.54212614T>C

Select item 147657053714.

rs1476570537 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 19:53709158 (GRCh38)
19:54212412 (GRCh37)
Canonical SPDI:: NC_000019.10:53709157:G:A,NC_000019.10:53709157:G:C,NC_000019.10:53709157:G:T
Gene:: MIR518C (Varview), MIR524 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00011/2 (TOMMO)
HGVS:: NC_000019.10:g.53709158G>A, NC_000019.10:g.53709158G>C, NC_000019.10:g.53709158G>T, NC_000019.9:g.54212412G>A, NC_000019.9:g.54212412G>C, NC_000019.9:g.54212412G>T

Select item 147645993615.

rs1476459936 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:53711104 (GRCh38)
19:54214358 (GRCh37)
Canonical SPDI:: NC_000019.10:53711103:T:C
Gene:: MIR524 (Varview), MIR517A (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
HGVS:: NC_000019.10:g.53711104T>C, NC_000019.9:g.54214358T>C

Select item 147322200316.

rs1473222003 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:53709977 (GRCh38)
19:54213231 (GRCh37)
Canonical SPDI:: NC_000019.10:53709976:A:G
Gene:: MIR524 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.53709977A>G, NC_000019.9:g.54213231A>G

Select item 147312103217.

rs1473121032 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:53709437 (GRCh38)
19:54212691 (GRCh37)
Canonical SPDI:: NC_000019.10:53709436:A:G
Gene:: MIR524 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.53709437A>G, NC_000019.9:g.54212691A>G

Select item 147121899318.

rs1471218993 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:53709447 (GRCh38)
19:54212701 (GRCh37)
Canonical SPDI:: NC_000019.10:53709446:C:T
Gene:: MIR524 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.53709447C>T, NC_000019.9:g.54212701C>T

Select item 147063013819.

rs1470630138 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:53710693 (GRCh38)
19:54213947 (GRCh37)
Canonical SPDI:: NC_000019.10:53710692:C:A,NC_000019.10:53710692:C:T
Gene:: MIR524 (Varview), MIR517A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000318/5 (TOMMO)
HGVS:: NC_000019.10:g.53710693C>A, NC_000019.10:g.53710693C>T, NC_000019.9:g.54213947C>A, NC_000019.9:g.54213947C>T

Select item 146770294220.

rs1467702942 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:53711160 (GRCh38)
19:54214414 (GRCh37)
Canonical SPDI:: NC_000019.10:53711159:A:T
Gene:: MIR524 (Varview), MIR517A (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
T=0.000637/11 (TOMMO)
HGVS:: NC_000019.10:g.53711160A>T, NC_000019.9:g.54214414A>T

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