SNP Links for Gene (Select 677850) - SNP

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Items: 1 to 20 of 662

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Select item 14906873801.

rs1490687380 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:76559346 (GRCh38)
17:74555428 (GRCh37)
Canonical SPDI:: NC_000017.11:76559345:A:G
Gene:: SNORD1B (Varview), SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.76559346A>G, NC_000017.10:g.74555428A>G

Select item 14891868982.

rs1489186898 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:76558266 (GRCh38)
17:74554348 (GRCh37)
Canonical SPDI:: NC_000017.11:76558265:G:A
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.76558266G>A, NC_000017.10:g.74554348G>A

Select item 14886540833.

rs1488654083 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:76558054 (GRCh38)
17:74554136 (GRCh37)
Canonical SPDI:: NC_000017.11:76558053:A:G
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.76558054A>G, NC_000017.10:g.74554136A>G

Select item 14880322844.

rs1488032284 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:76557901 (GRCh38)
17:74553983 (GRCh37)
Canonical SPDI:: NC_000017.11:76557900:C:A
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.76557901C>A, NC_000017.10:g.74553983C>A

Select item 14870485645.

rs1487048564 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:76557662 (GRCh38)
17:74553744 (GRCh37)
Canonical SPDI:: NC_000017.11:76557661:C:A
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.76557662C>A, NC_000017.10:g.74553744C>A

Select item 14868683836.

rs1486868383 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:76557641 (GRCh38)
17:74553723 (GRCh37)
Canonical SPDI:: NC_000017.11:76557640:C:A
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.76557641C>A, NC_000017.10:g.74553723C>A

Select item 14868310027.

rs1486831002 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:76558727 (GRCh38)
17:74554809 (GRCh37)
Canonical SPDI:: NC_000017.11:76558726:A:G
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.76558727A>G, NC_000017.10:g.74554809A>G

Select item 14856736168.

rs1485673616 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:76557189 (GRCh38)
17:74553271 (GRCh37)
Canonical SPDI:: NC_000017.11:76557188:G:T
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.76557189G>T, NC_000017.10:g.74553271G>T

Select item 14842675639.

rs1484267563 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 17:76557301 (GRCh38)
17:74553384 (GRCh37)
Canonical SPDI:: NC_000017.11:76557301:G:GG
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000017.11:g.76557302dup, NC_000017.10:g.74553384dup

Select item 148356551410.

rs1483565514 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:76556801 (GRCh38)
17:74552883 (GRCh37)
Canonical SPDI:: NC_000017.11:76556800:G:C
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.76556801G>C, NC_000017.10:g.74552883G>C

Select item 148219619111.

rs1482196191 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:76558118 (GRCh38)
17:74554200 (GRCh37)
Canonical SPDI:: NC_000017.11:76558117:C:T
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.76558118C>T, NC_000017.10:g.74554200C>T

Select item 148195792012.

rs1481957920 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 17:76557410 (GRCh38)
17:74553492 (GRCh37)
Canonical SPDI:: NC_000017.11:76557408:AGA:A
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000017.11:g.76557410_76557411del, NC_000017.10:g.74553492_74553493del

Select item 148071886013.

rs1480718860 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:76558191 (GRCh38)
17:74554273 (GRCh37)
Canonical SPDI:: NC_000017.11:76558190:T:C
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.76558191T>C, NC_000017.10:g.74554273T>C

Select item 148024724314.

rs1480247243 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:76557454 (GRCh38)
17:74553536 (GRCh37)
Canonical SPDI:: NC_000017.11:76557453:C:G
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000017.11:g.76557454C>G, NC_000017.10:g.74553536C>G

Select item 147800900815.

rs1478009008 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:76556808 (GRCh38)
17:74552890 (GRCh37)
Canonical SPDI:: NC_000017.11:76556807:A:G
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.76556808A>G, NC_000017.10:g.74552890A>G

Select item 147759804116.

rs1477598041 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:76558037 (GRCh38)
17:74554119 (GRCh37)
Canonical SPDI:: NC_000017.11:76558036:G:A
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.76558037G>A, NC_000017.10:g.74554119G>A

Select item 147723839317.

rs1477238393 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:76557878 (GRCh38)
17:74553960 (GRCh37)
Canonical SPDI:: NC_000017.11:76557877:A:G
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.76557878A>G, NC_000017.10:g.74553960A>G

Select item 147283194018.

rs1472831940 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:76557808 (GRCh38)
17:74553890 (GRCh37)
Canonical SPDI:: NC_000017.11:76557807:T:G
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.76557808T>G, NC_000017.10:g.74553890T>G, NR_038108.1:n.45T>G, NR_038109.1:n.45T>G, NR_038110.1:n.45T>G, NR_038111.1:n.45T>G

Select item 147149344719.

rs1471493447 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:76557687 (GRCh38)
17:74553769 (GRCh37)
Canonical SPDI:: NC_000017.11:76557686:T:C
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.76557687T>C, NC_000017.10:g.74553769T>C

Select item 146782320920.

rs1467823209 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:76559005 (GRCh38)
17:74555087 (GRCh37)
Canonical SPDI:: NC_000017.11:76559004:T:A
Gene:: SNORD1C (Varview), SNHG16 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.76559005T>A, NC_000017.10:g.74555087T>A, NR_038108.1:n.155T>A, NR_038109.1:n.155T>A

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