SNP Links for Gene (Select 84957) - SNP

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Select item 14907811221.

rs1490781122 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:73391222 (GRCh38)
11:73102267 (GRCh37)
Canonical SPDI:: NC_000011.10:73391221:T:C
Gene:: RELT (Varview)
Functional Consequence:: coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,synonymous_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.73391222T>C, NC_000011.9:g.73102267T>C, NM_032871.4:c.366T>C, NM_032871.3:c.366T>C, NM_152222.2:c.366T>C, NM_152222.1:c.366T>C, XM_047427758.1:c.366T>C, XM_047427757.1:c.366T>C

Select item 14907427142.

rs1490742714 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:73376344 (GRCh38)
11:73087389 (GRCh37)
Canonical SPDI:: NC_000011.10:73376343:C:G
Gene:: RELT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.73376344C>G, NC_000011.9:g.73087389C>G

Select item 14906461403.

rs1490646140 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 11:73384795 (GRCh38)
11:73095840 (GRCh37)
Canonical SPDI:: NC_000011.10:73384794:GG:G
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0.000071/1 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.73384796del, NC_000011.9:g.73095841del

Select item 14905960494.

rs1490596049 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:73382667 (GRCh38)
11:73093712 (GRCh37)
Canonical SPDI:: NC_000011.10:73382666:G:T
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.73382667G>T, NC_000011.9:g.73093712G>T

Select item 14904193815.

rs1490419381 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:73397940 (GRCh38)
11:73108985 (GRCh37)
Canonical SPDI:: NC_000011.10:73397939:C:A
Gene:: RELT (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.73397940C>A, NC_000011.9:g.73108985C>A

Select item 14901975586.

rs1490197558 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:73375912 (GRCh38)
11:73086957 (GRCh37)
Canonical SPDI:: NC_000011.10:73375911:C:G
Gene:: RELT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.73375912C>G, NC_000011.9:g.73086957C>G

Select item 14898274187.

rs1489827418 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CATG [Show Flanks]
Chromosome:: 11:73385890 (GRCh38)
11:73096936 (GRCh37)
Canonical SPDI:: NC_000011.10:73385890:GCATG:GCATGCATG
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: GCAT=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.73385892_73385895dup, NC_000011.9:g.73096937_73096940dup

Select item 14897980868.

rs1489798086 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:73387852 (GRCh38)
11:73098897 (GRCh37)
Canonical SPDI:: NC_000011.10:73387851:G:A
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.73387852G>A, NC_000011.9:g.73098897G>A

Select item 14897528379.

rs1489752837 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:73376888 (GRCh38)
11:73087933 (GRCh37)
Canonical SPDI:: NC_000011.10:73376887:C:T
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.73376888C>T, NC_000011.9:g.73087933C>T

Select item 148929888510.

rs1489298885 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:73387902 (GRCh38)
11:73098947 (GRCh37)
Canonical SPDI:: NC_000011.10:73387901:C:G,NC_000011.10:73387901:C:T
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.73387902C>G, NC_000011.10:g.73387902C>T, NC_000011.9:g.73098947C>G, NC_000011.9:g.73098947C>T

Select item 148928277511.

rs1489282775 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:73389119 (GRCh38)
11:73100164 (GRCh37)
Canonical SPDI:: NC_000011.10:73389118:A:G
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.73389119A>G, NC_000011.9:g.73100164A>G, NM_032871.4:c.-18A>G, NM_032871.3:c.-18A>G, NM_152222.2:c.-18A>G, NM_152222.1:c.-18A>G, XM_047427758.1:c.-18A>G, XM_047427757.1:c.-18A>G

Select item 148912411112.

rs1489124111 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:73395883 (GRCh38)
11:73106928 (GRCh37)
Canonical SPDI:: NC_000011.10:73395882:C:G
Gene:: RELT (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.73395883C>G, NC_000011.9:g.73106928C>G, NM_032871.4:c.*392C>G, NM_032871.3:c.*392C>G, NM_152222.2:c.*392C>G, NM_152222.1:c.*392C>G, XM_047427759.1:c.*392C>G, XM_047427760.1:c.*392C>G, XM_047427761.1:c.*392C>G, XM_047427758.1:c.*392C>G

Select item 148903740113.

rs1489037401 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:73388923 (GRCh38)
11:73099968 (GRCh37)
Canonical SPDI:: NC_000011.10:73388922:C:T
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.73388923C>T, NC_000011.9:g.73099968C>T

Select item 148902192414.

rs1489021924 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:73381609 (GRCh38)
11:73092654 (GRCh37)
Canonical SPDI:: NC_000011.10:73381608:A:G,NC_000011.10:73381608:A:T
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.73381609A>G, NC_000011.10:g.73381609A>T, NC_000011.9:g.73092654A>G, NC_000011.9:g.73092654A>T

Select item 148876453215.

rs1488764532 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:73396549 (GRCh38)
11:73107594 (GRCh37)
Canonical SPDI:: NC_000011.10:73396548:C:T
Gene:: RELT (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.73396549C>T, NC_000011.9:g.73107594C>T, NM_032871.4:c.*1058C>T, NM_032871.3:c.*1058C>T, NM_152222.2:c.*1058C>T, NM_152222.1:c.*1058C>T, XM_047427759.1:c.*1058C>T, XM_047427760.1:c.*1058C>T, XM_047427761.1:c.*1058C>T, XM_047427758.1:c.*1058C>T

Select item 148873411316.

rs1488734113 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:73388751 (GRCh38)
11:73099796 (GRCh37)
Canonical SPDI:: NC_000011.10:73388750:C:A
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.73388751C>A, NC_000011.9:g.73099796C>A

Select item 148871382717.

rs1488713827 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:73396681 (GRCh38)
11:73107726 (GRCh37)
Canonical SPDI:: NC_000011.10:73396680:A:C
Gene:: RELT (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.73396681A>C, NC_000011.9:g.73107726A>C, NM_032871.4:c.*1190A>C, NM_032871.3:c.*1190A>C, NM_152222.2:c.*1190A>C, NM_152222.1:c.*1190A>C, XM_047427759.1:c.*1190A>C, XM_047427760.1:c.*1190A>C, XM_047427761.1:c.*1190A>C, XM_047427758.1:c.*1190A>C

Select item 148853981218.

rs1488539812 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:73381251 (GRCh38)
11:73092296 (GRCh37)
Canonical SPDI:: NC_000011.10:73381250:G:A
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.73381251G>A, NC_000011.9:g.73092296G>A

Select item 148849286219.

rs1488492862 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:73384819 (GRCh38)
11:73095864 (GRCh37)
Canonical SPDI:: NC_000011.10:73384818:A:G
Gene:: RELT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.73384819A>G, NC_000011.9:g.73095864A>G

Select item 148841971120.

rs1488419711 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:73375422 (GRCh38)
11:73086467 (GRCh37)
Canonical SPDI:: NC_000011.10:73375421:C:A
Gene:: RELT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.73375422C>A, NC_000011.9:g.73086467C>A

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