SNP Links for Nucleotide (Select 572153105) - SNP

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Links from Nucleotide

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Select item 14868541121.

rs1486854112 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:194760453 (GRCh38)
2:195625177 (GRCh37)
Canonical SPDI:: NC_000002.12:194760452:A:G
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.194760453A>G, NC_000002.11:g.195625177A>G, NR_110223.1:n.1870A>G

Select item 14868183512.

rs1486818351 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:194761246 (GRCh38)
2:195625970 (GRCh37)
Canonical SPDI:: NC_000002.12:194761245:A:C
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.194761246A>C, NC_000002.11:g.195625970A>C, NR_110223.1:n.2663A>C

Select item 14849357723.

rs1484935772 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:194730615 (GRCh38)
2:195595339 (GRCh37)
Canonical SPDI:: NC_000002.12:194730614:T:C
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.194730615T>C, NC_000002.11:g.195595339T>C, NR_110223.1:n.21T>C

Select item 14823340024.

rs1482334002 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:194760287 (GRCh38)
2:195625011 (GRCh37)
Canonical SPDI:: NC_000002.12:194760286:A:G
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
HGVS:: NC_000002.12:g.194760287A>G, NC_000002.11:g.195625011A>G, NR_110223.1:n.1704A>G

Select item 14819382205.

rs1481938220 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:194760095 (GRCh38)
2:195624819 (GRCh37)
Canonical SPDI:: NC_000002.12:194760094:T:C
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000002.12:g.194760095T>C, NC_000002.11:g.195624819T>C, NR_110223.1:n.1512T>C

Select item 14818125666.

rs1481812566 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:194759588 (GRCh38)
2:195624312 (GRCh37)
Canonical SPDI:: NC_000002.12:194759587:G:C
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.194759588G>C, NC_000002.11:g.195624312G>C, NR_110223.1:n.1005G>C

Select item 14798222027.

rs1479822202 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 2:194736245 (GRCh38)
2:195600969 (GRCh37)
Canonical SPDI:: NC_000002.12:194736244:C:G,NC_000002.12:194736244:C:T
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.194736245C>G, NC_000002.12:g.194736245C>T, NC_000002.11:g.195600969C>G, NC_000002.11:g.195600969C>T, NR_110223.1:n.330C>G, NR_110223.1:n.330C>T

Select item 14793450298.

rs1479345029 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 2:194730650 (GRCh38)
2:195595374 (GRCh37)
Canonical SPDI:: NC_000002.12:194730649:CCC:CC
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0.000071/1 (ALFA)
-=0.000034/9 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000002.12:g.194730652del, NC_000002.11:g.195595376del, NR_110223.1:n.58del

Select item 14760100959.

rs1476010095 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:194744585 (GRCh38)
2:195609309 (GRCh37)
Canonical SPDI:: NC_000002.12:194744584:C:T
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000042/11 (TOPMED)
T=0.000057/8 (GnomAD)
HGVS:: NC_000002.12:g.194744585C>T, NC_000002.11:g.195609309C>T, NR_110223.1:n.473C>T

Select item 147577200710.

rs1475772007 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:194761075 (GRCh38)
2:195625799 (GRCh37)
Canonical SPDI:: NC_000002.12:194761074:T:C
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.194761075T>C, NC_000002.11:g.195625799T>C, NR_110223.1:n.2492T>C

Select item 147541070111.

rs1475410701 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:194760982 (GRCh38)
2:195625706 (GRCh37)
Canonical SPDI:: NC_000002.12:194760981:A:G
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
HGVS:: NC_000002.12:g.194760982A>G, NC_000002.11:g.195625706A>G, NR_110223.1:n.2399A>G

Select item 147231399812.

rs1472313998 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 2:194760304 (GRCh38)
2:195625028 (GRCh37)
Canonical SPDI:: NC_000002.12:194760303:TT:
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000071/1 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000019/5 (TOPMED)
HGVS:: NC_000002.12:g.194760304_194760305del, NC_000002.11:g.195625028_195625029del, NR_110223.1:n.1721_1722del

Select item 147161367813.

rs1471613678 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AGTG [Show Flanks]
Chromosome:: 2:194759184 (GRCh38)
2:195623909 (GRCh37)
Canonical SPDI:: NC_000002.12:194759184:GTGAGTG:GTGAGTGAGTG
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGAGTGAGTG=0.000071/1 (ALFA)
GTGA=0.000007/1 (GnomAD)
GTGA=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.194759188_194759191dup, NC_000002.11:g.195623912_195623915dup, NR_110223.1:n.605_608dup

Select item 147100017614.

rs1471000176 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:194761213 (GRCh38)
2:195625937 (GRCh37)
Canonical SPDI:: NC_000002.12:194761212:A:G
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.194761213A>G, NC_000002.11:g.195625937A>G, NR_110223.1:n.2630A>G

Select item 147021261315.

rs1470212613 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:194759835 (GRCh38)
2:195624559 (GRCh37)
Canonical SPDI:: NC_000002.12:194759834:T:C
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000342/1 (KOREAN)
HGVS:: NC_000002.12:g.194759835T>C, NC_000002.11:g.195624559T>C, NR_110223.1:n.1252T>C

Select item 146772156816.

rs1467721568 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:194759178 (GRCh38)
2:195623902 (GRCh37)
Canonical SPDI:: NC_000002.12:194759177:G:C
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.194759178G>C, NC_000002.11:g.195623902G>C, NR_110223.1:n.595G>C

Select item 146666672617.

rs1466666726 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:194761194 (GRCh38)
2:195625918 (GRCh37)
Canonical SPDI:: NC_000002.12:194761193:T:A
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.194761194T>A, NC_000002.11:g.195625918T>A, NR_110223.1:n.2611T>A

Select item 146622981118.

rs1466229811 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:194759310 (GRCh38)
2:195624034 (GRCh37)
Canonical SPDI:: NC_000002.12:194759309:C:T
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.194759310C>T, NC_000002.11:g.195624034C>T, NR_110223.1:n.727C>T

Select item 146499716519.

rs1464997165 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AACATTTAGCAGTT [Show Flanks]
Chromosome:: 2:194760064 (GRCh38)
2:195624789 (GRCh37)
Canonical SPDI:: NC_000002.12:194760064:TTAACATTTAGCAGTT:TTAACATTTAGCAGTTAACATTTAGCAGTT
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTAACATTTAGCAGTTAACATTTAGCAGTT=0.000169/2 (ALFA)
TTAACATTTAGCAG=0.000007/1 (GnomAD)
TTAACATTTAGCAG=0.000283/5 (TOMMO)
TTAACATTTAGCAG=0.000468/3 (1000Genomes)
TTAACATTTAGCAG=0.004367/8 (Korea1K)
TTAACATTTAGCAG=0.00463/1 (Vietnamese)
HGVS:: NC_000002.12:g.194760067_194760080dup, NC_000002.11:g.195624791_195624804dup, NR_110223.1:n.1484_1497dup

Select item 146446928320.

rs1464469283 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 2:194759637 (GRCh38)
2:195624361 (GRCh37)
Canonical SPDI:: NC_000002.12:194759636:G:A,NC_000002.12:194759636:G:T
Gene:: LINC01790 (Varview), LOC105376755 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.194759637G>A, NC_000002.12:g.194759637G>T, NC_000002.11:g.195624361G>A, NC_000002.11:g.195624361G>T, NR_110223.1:n.1054G>A, NR_110223.1:n.1054G>T