SNP Links for Nucleotide (Select 751868095) - SNP

Links from Nucleotide

Items: 1 to 20 of 82

<< First< Prev

Page of 5

Next >Last >>

Select item 14915478251.

rs1491547825 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: X:123961300 (GRCh38)
X:123095151 (GRCh37)
Canonical SPDI:: NC_000023.11:123961300::T
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.00002/1 (GnomAD)
HGVS:: NC_000023.11:g.123961300_123961301insT, NC_000023.10:g.123095150_123095151insT, NG_033796.2:g.5741_5742insT, NR_130770.1:n.41_42insA

Select item 14914516512.

rs1491451651 has merged into rs760265846 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCC>-,C,CC,CCCC,CCCCC,CCCCCC [Show Flanks]
Chromosome:: X:123961309 (GRCh38)
X:123095159 (GRCh37)
Canonical SPDI:: NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCC,NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCCC,NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCCCC,NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCCCCCC,NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCCCCCCC,NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCCCCCCCC
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCCCCCCCCCC=0./0 (ALFA)
-=0.37881/1430 (1000Genomes)
HGVS:: NC_000023.11:g.123961309_123961311del, NC_000023.11:g.123961310_123961311del, NC_000023.11:g.123961311del, NC_000023.11:g.123961311dup, NC_000023.11:g.123961310_123961311dup, NC_000023.11:g.123961309_123961311dup, NC_000023.10:g.123095159_123095161del, NC_000023.10:g.123095160_123095161del, NC_000023.10:g.123095161del, NC_000023.10:g.123095161dup, NC_000023.10:g.123095160_123095161dup, NC_000023.10:g.123095159_123095161dup, NG_033796.2:g.5750_5752del, NG_033796.2:g.5751_5752del, NG_033796.2:g.5752del, NG_033796.2:g.5752dup, NG_033796.2:g.5751_5752dup, NG_033796.2:g.5750_5752dup, NR_130770.1:n.40_42del, NR_130770.1:n.41_42del, NR_130770.1:n.42del, NR_130770.1:n.42dup, NR_130770.1:n.41_42dup, NR_130770.1:n.40_42dup

Select item 14913669383.

rs1491366938 [Homo sapiens]

Variant type:: DEL
Alleles:: AC>- [Show Flanks]
Chromosome:: X:123961299 (GRCh38)
X:123095149 (GRCh37)
Canonical SPDI:: NC_000023.11:123961298:AC:
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000023.11:g.123961299_123961300del, NC_000023.10:g.123095149_123095150del, NG_033796.2:g.5740_5741del, NR_130770.1:n.42_43del

Select item 14912916274.

rs1491291627 has merged into rs760265846 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCC>-,C,CC,CCCC,CCCCC,CCCCCC [Show Flanks]
Chromosome:: X:123961309 (GRCh38)
X:123095159 (GRCh37)
Canonical SPDI:: NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCC,NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCCC,NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCCCC,NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCCCCCC,NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCCCCCCC,NC_000023.11:123961299:CCCCCCCCCCCC:CCCCCCCCCCCCCCC
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCCCCCCCCCC=0./0 (ALFA)
-=0.37881/1430 (1000Genomes)
HGVS:: NC_000023.11:g.123961309_123961311del, NC_000023.11:g.123961310_123961311del, NC_000023.11:g.123961311del, NC_000023.11:g.123961311dup, NC_000023.11:g.123961310_123961311dup, NC_000023.11:g.123961309_123961311dup, NC_000023.10:g.123095159_123095161del, NC_000023.10:g.123095160_123095161del, NC_000023.10:g.123095161del, NC_000023.10:g.123095161dup, NC_000023.10:g.123095160_123095161dup, NC_000023.10:g.123095159_123095161dup, NG_033796.2:g.5750_5752del, NG_033796.2:g.5751_5752del, NG_033796.2:g.5752del, NG_033796.2:g.5752dup, NG_033796.2:g.5751_5752dup, NG_033796.2:g.5750_5752dup, NR_130770.1:n.40_42del, NR_130770.1:n.41_42del, NR_130770.1:n.42del, NR_130770.1:n.42dup, NR_130770.1:n.41_42dup, NR_130770.1:n.40_42dup

Select item 14712388655.

rs1471238865 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: X:123961309 (GRCh38)
X:123095160 (GRCh37)
Canonical SPDI:: NC_000023.11:123961309::G
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.123961309_123961310insG, NC_000023.10:g.123095159_123095160insG, NG_033796.2:g.5750_5751insG, NR_130770.1:n.32_33insC

Select item 14689168226.

rs1468916822 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:123959296 (GRCh38)
X:123093146 (GRCh37)
Canonical SPDI:: NC_000023.11:123959295:T:C
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.123959296T>C, NC_000023.10:g.123093146T>C, NG_033796.2:g.3737T>C, NR_130770.1:n.263A>G

Select item 14638310407.

rs1463831040 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:123959330 (GRCh38)
X:123093180 (GRCh37)
Canonical SPDI:: NC_000023.11:123959329:G:A
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/2 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000023.11:g.123959330G>A, NC_000023.10:g.123093180G>A, NG_033796.2:g.3771G>A, NR_130770.1:n.229C>T

Select item 14565528118.

rs1456552811 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:123961242 (GRCh38)
X:123095092 (GRCh37)
Canonical SPDI:: NC_000023.11:123961241:C:G
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.00002/2 (GnomAD)
HGVS:: NC_000023.11:g.123961242C>G, NC_000023.10:g.123095092C>G, NG_033796.2:g.5683C>G, NR_130770.1:n.100G>C

Select item 14466090669.

rs1446609066 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:123959389 (GRCh38)
X:123093239 (GRCh37)
Canonical SPDI:: NC_000023.11:123959388:G:A
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.123959389G>A, NC_000023.10:g.123093239G>A, NG_033796.2:g.3830G>A, NR_130770.1:n.170C>T

Select item 144245165810.

rs1442451658 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: X:123961299 (GRCh38)
X:123095149 (GRCh37)
Canonical SPDI:: NC_000023.11:123961298:A:
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000023.11:g.123961299del, NC_000023.10:g.123095149del, NG_033796.2:g.5740del, NR_130770.1:n.43del

Select item 143478771711.

rs1434787717 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: X:123961242 (GRCh38)
X:123095092 (GRCh37)
Canonical SPDI:: NC_000023.11:123961241:C:
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00002/2 (GnomAD)
-=0.000053/14 (TOPMED)
HGVS:: NC_000023.11:g.123961242del, NC_000023.10:g.123095092del, NG_033796.2:g.5683del, NR_130770.1:n.100del

Select item 143276655912.

rs1432766559 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:123961236 (GRCh38)
X:123095086 (GRCh37)
Canonical SPDI:: NC_000023.11:123961235:T:C
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
T=0./0 (SGDP_PRJ)
HGVS:: NC_000023.11:g.123961236T>C, NC_000023.10:g.123095086T>C, NG_033796.2:g.5677T>C, NR_130770.1:n.106A>G

Select item 141876454913.

rs1418764549 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:123959286 (GRCh38)
X:123093136 (GRCh37)
Canonical SPDI:: NC_000023.11:123959285:G:C
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.00014/2 (ALFA)
HGVS:: NC_000023.11:g.123959286G>C, NC_000023.10:g.123093136G>C, NG_033796.2:g.3727G>C, NR_130770.1:n.273C>G

Select item 140350287714.

rs1403502877 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTGCAATA [Show Flanks]
Chromosome:: X:123959288 (GRCh38)
X:123093139 (GRCh37)
Canonical SPDI:: NC_000023.11:123959288:ACTGCAATA:ACTGCAATACTGCAATA
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACTGCAATACTGCAATA=0./0 (ALFA)
ACTGCAAT=0.000058/6 (GnomAD)
ACTGCAAT=0.000083/22 (TOPMED)
HGVS:: NC_000023.11:g.123959290_123959297dup, NC_000023.10:g.123093140_123093147dup, NG_033796.2:g.3731_3738dup, NR_130770.1:n.263_270dup

Select item 140150224015.

rs1401502240 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:123961198 (GRCh38)
X:123095048 (GRCh37)
Canonical SPDI:: NC_000023.11:123961197:C:T
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00001/1 (GnomAD)
T=0.00021/1 (1000Genomes)
HGVS:: NC_000023.11:g.123961198C>T, NC_000023.10:g.123095048C>T, NG_033796.2:g.5639C>T, NR_130770.1:n.144G>A

Select item 140142536716.

rs1401425367 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:123961211 (GRCh38)
X:123095061 (GRCh37)
Canonical SPDI:: NC_000023.11:123961210:C:T
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.0004/2 (ALFA)
HGVS:: NC_000023.11:g.123961211C>T, NC_000023.10:g.123095061C>T, NG_033796.2:g.5652C>T, NR_130770.1:n.131G>A

Select item 139928438517.

rs1399284385 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: X:123961299 (GRCh38)
X:123095149 (GRCh37)
Canonical SPDI:: NC_000023.11:123961298:A:C,NC_000023.11:123961298:A:T
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
C=0.03512/101 (KOREAN)
HGVS:: NC_000023.11:g.123961299A>C, NC_000023.11:g.123961299A>T, NC_000023.10:g.123095149A>C, NC_000023.10:g.123095149A>T, NG_033796.2:g.5740A>C, NG_033796.2:g.5740A>T, NR_130770.1:n.43T>G, NR_130770.1:n.43T>A

Select item 139858459518.

rs1398584595 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:123961322 (GRCh38)
X:123095172 (GRCh37)
Canonical SPDI:: NC_000023.11:123961321:C:T
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.123961322C>T, NC_000023.10:g.123095172C>T, NG_033796.2:g.5763C>T, NM_001282418.2:c.-282C>T, NM_001282418.1:c.-282C>T, NM_001375370.1:c.-276C>T, NM_001375369.1:c.-211C>T, NM_001375376.1:c.-276C>T, NM_001375375.1:c.-211C>T, XM_006724727.2:c.-407C>T, XM_006724727.1:c.-407C>T, XM_024452328.2:c.-407C>T, XM_024452328.1:c.-407C>T, XM_047441777.1:c.-657C>T, XM_047441776.1:c.-592C>T, XM_047441782.1:c.-657C>T, XM_047441781.1:c.-592C>T, XM_047441775.1:c.-342C>T, XM_047441780.1:c.-342C>T, NR_130770.1:n.20G>A

Select item 137858942319.

rs1378589423 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:123959367 (GRCh38)
X:123093217 (GRCh37)
Canonical SPDI:: NC_000023.11:123959366:C:T
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.123959367C>T, NC_000023.10:g.123093217C>T, NG_033796.2:g.3808C>T, NR_130770.1:n.192G>A

Select item 137507711920.

rs1375077119 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:123961209 (GRCh38)
X:123095059 (GRCh37)
Canonical SPDI:: NC_000023.11:123961208:T:G
Gene:: STAG2 (Varview), STAG2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.123961209T>G, NC_000023.10:g.123095059T>G, NG_033796.2:g.5650T>G, NR_130770.1:n.133A>C

<< First< Prev

Page of 5

Next >Last >>

dbSNP

Result Filters

Validation Status

Function Class

Variation Class

Global MAF

Custom range

Additional filters

Display Settings:

Send to:

Links from Nucleotide

Items: 1 to 20 of 82

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity