SNP Links for PMC (Select 2427204) - SNP

Select item 116740891.

rs11674089 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:26364208 (GRCh38)
2:26587076 (GRCh37)
Canonical SPDI:: NC_000002.12:26364207:G:A,NC_000002.12:26364207:G:C,NC_000002.12:26364207:G:T
Gene:: SELENOI (Varview)
Functional Consequence:: intron_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.155117/2600 (TOMMO)
A=0.193231/354 (Korea1K)
A=0.199317/584 (KOREAN)
A=0.213757/404 (HapMap)
A=0.226852/49 (Qatari)
A=0.247033/1237 (1000Genomes)
A=0.272587/72151 (TOPMED)
A=0.277154/148 (MGP)
A=0.284692/39661 (GnomAD)
A=0.301823/629 (HGDP_Stanford)
A=0.334458/1289 (ALSPAC)
A=0.335/201 (NorthernSweden)
A=0.348706/1293 (TWINSUK)
A=0.358717/358 (GoNL)
G=0.368421/14 (Siberian)
A=0.372041/1666 (Estonian)
A=0.382075/81 (Vietnamese)
G=0.397059/108 (SGDP_PRJ)
A=0.4/16 (GENOME_DK)
A=0.472222/34 (PRJEB36033)
HGVS:: NC_000002.12:g.26364208G>A, NC_000002.12:g.26364208G>C, NC_000002.12:g.26364208G>T, NC_000002.11:g.26587076G>A, NC_000002.11:g.26587076G>C, NC_000002.11:g.26587076G>T

Select item 23044292.

rs2304429 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:25235677 (GRCh38)
2:25458546 (GRCh37)
Canonical SPDI:: NC_000002.12:25235676:C:A,NC_000002.12:25235676:C:T
Gene:: DNMT3A (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.443974/137021 (ALFA)
T=0.247878/146 (Vietnamese)
T=0.293893/231 (PRJEB37584)
T=0.294539/863 (KOREAN)
T=0.300218/550 (Korea1K)
C=0.309524/13 (Siberian)
C=0.328947/100 (SGDP_PRJ)
T=0.332275/628 (HapMap)
T=0.357277/1789 (1000Genomes)
T=0.360298/28354 (PAGE_STUDY)
T=0.36556/6127 (TOMMO)
C=0.383333/230 (NorthernSweden)
C=0.4/16 (GENOME_DK)
C=0.4/1792 (Estonian)
C=0.401804/401 (GoNL)
C=0.409655/1519 (TWINSUK)
C=0.413596/1594 (ALSPAC)
C=0.424342/129 (FINRISK)
T=0.434678/905 (HGDP_Stanford)
C=0.436833/89584 (GENOGRAPHIC)
T=0.438551/116080 (TOPMED)
C=0.44/44 (PRJEB36033)
T=0.452455/63350 (GnomAD)
T=0.455636/5926 (GoESP)
C=0.481481/104 (Qatari)
C=0.485019/259 (MGP)
C=0.486224/121030 (GnomAD_exomes)
C=0.490232/59222 (ExAC)
HGVS:: NC_000002.12:g.25235677C>A, NC_000002.12:g.25235677C>T, NC_000002.11:g.25458546C>A, NC_000002.11:g.25458546C>T, NG_029465.2:g.111914G>T, NG_029465.2:g.111914G>A

Select item 16629873.

rs1662987 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:26715314 (GRCh38)
2:26938182 (GRCh37)
Canonical SPDI:: NC_000002.12:26715313:G:A,NC_000002.12:26715313:G:C,NC_000002.12:26715313:G:T
Gene:: KCNK3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.237283/46916 (ALFA)
T=0./0 (KOREAN)
G=0.160714/9 (Siberian)
G=0.164179/88 (SGDP_PRJ)
G=0.196667/118 (NorthernSweden)
G=0.229018/1026 (Estonian)
G=0.234165/488 (HGDP_Stanford)
G=0.24001/925 (ALSPAC)
G=0.240831/893 (TWINSUK)
G=0.246493/246 (GoNL)
G=0.25/54 (Qatari)
G=0.256141/67798 (TOPMED)
G=0.257516/36077 (GnomAD)
G=0.262336/1314 (1000Genomes)
G=0.269556/510 (HapMap)
G=0.3/12 (GENOME_DK)
G=0.303029/5079 (TOMMO)
G=0.311321/66 (Vietnamese)
G=0.344828/20 (PRJEB36033)
HGVS:: NC_000002.12:g.26715314G>A, NC_000002.12:g.26715314G>C, NC_000002.12:g.26715314G>T, NC_000002.11:g.26938182G>A, NC_000002.11:g.26938182G>C, NC_000002.11:g.26938182G>T, NG_033884.1:g.27602G>A, NG_033884.1:g.27602G>C, NG_033884.1:g.27602G>T

dbSNP