Name: rs11289794
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs11289794

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr6:154227988-154227997 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delAA / delA / dupA
Variation Type: Indel Insertion and Deletion
Frequency: (A)₁₀=0.405943 (107449/264690, TOPMED)
delA=0.4190 (3699/8828, ALFA)
(A)₁₀=0.3146 (2015/6404, 1000G_30x) (+ 9 more)
(A)₁₀=0.3127 (1566/5008, 1000G)
(A)₁₀=0.4439 (1987/4476, Estonian)
(A)₁₀=0.4598 (1772/3854, ALSPAC)
(A)₁₀=0.4625 (1715/3708, TWINSUK)
(A)₁₀=0.2511 (460/1832, Korea1K)
(A)₁₀=0.473 (472/998, GoNL)
delA=0.490 (293/598, NorthernSweden)
(A)₁₀=0.50 (20/40, GENOME_DK)
delA=0.50 (20/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: OPRM1 : Intron Variant
IPCEF1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	8828	AAAAAAAAAA=0.5810	AAAAAAAAA=0.4190, AAAAAAAAAAA=0.0000	0.403489	0.241504	0.355007	32
European	Sub	8206	AAAAAAAAAA=0.5596	AAAAAAAAA=0.4404, AAAAAAAAAAA=0.0000	0.371679	0.252498	0.375823	32
African	Sub	428	AAAAAAAAAA=0.869	AAAAAAAAA=0.131, AAAAAAAAAAA=0.000	0.82243	0.084112	0.093458	32
African Others	Sub	10	AAAAAAAAAA=0.7	AAAAAAAAA=0.3, AAAAAAAAAAA=0.0	0.6	0.2	0.2	1
African American	Sub	418	AAAAAAAAAA=0.873	AAAAAAAAA=0.127, AAAAAAAAAAA=0.000	0.827751	0.08134	0.090909	32
Asian	Sub	4	AAAAAAAAAA=0.0	AAAAAAAAA=1.0, AAAAAAAAAAA=0.0	0.0	1.0	0.0	N/A
East Asian	Sub	2	AAAAAAAAAA=0.0	AAAAAAAAA=1.0, AAAAAAAAAAA=0.0	0.0	1.0	0.0	N/A
Other Asian	Sub	2	AAAAAAAAAA=0.0	AAAAAAAAA=1.0, AAAAAAAAAAA=0.0	0.0	1.0	0.0	N/A
Latin American 1	Sub	34	AAAAAAAAAA=1.00	AAAAAAAAA=0.00, AAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	46	AAAAAAAAAA=1.00	AAAAAAAAA=0.00, AAAAAAAAAAA=0.00	1.0	0.0	0.0	N/A
South Asian	Sub	6	AAAAAAAAAA=0.3	AAAAAAAAA=0.7, AAAAAAAAAAA=0.0	0.333333	0.666667	0.0	2
Other	Sub	104	AAAAAAAAAA=0.798	AAAAAAAAA=0.202, AAAAAAAAAAA=0.000	0.75	0.153846	0.096154	14

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	(A)₁₀=0.405943	delA=0.594057
Allele Frequency Aggregator	Total	Global	8828	(A)₁₀=0.5810	delA=0.4190, dupA=0.0000
Allele Frequency Aggregator	European	Sub	8206	(A)₁₀=0.5596	delA=0.4404, dupA=0.0000
Allele Frequency Aggregator	African	Sub	428	(A)₁₀=0.869	delA=0.131, dupA=0.000
Allele Frequency Aggregator	Other	Sub	104	(A)₁₀=0.798	delA=0.202, dupA=0.000
Allele Frequency Aggregator	Latin American 2	Sub	46	(A)₁₀=1.00	delA=0.00, dupA=0.00
Allele Frequency Aggregator	Latin American 1	Sub	34	(A)₁₀=1.00	delA=0.00, dupA=0.00
Allele Frequency Aggregator	South Asian	Sub	6	(A)₁₀=0.3	delA=0.7, dupA=0.0
Allele Frequency Aggregator	Asian	Sub	4	(A)₁₀=0.0	delA=1.0, dupA=0.0
1000Genomes_30x	Global	Study-wide	6404	(A)₁₀=0.3146	delA=0.6854
1000Genomes_30x	African	Sub	1786	(A)₁₀=0.3169	delA=0.6831
1000Genomes_30x	Europe	Sub	1266	(A)₁₀=0.4542	delA=0.5458
1000Genomes_30x	South Asian	Sub	1202	(A)₁₀=0.1938	delA=0.8062
1000Genomes_30x	East Asian	Sub	1170	(A)₁₀=0.2974	delA=0.7026
1000Genomes_30x	American	Sub	980	(A)₁₀=0.299	delA=0.701
1000Genomes	Global	Study-wide	5008	(A)₁₀=0.3127	delA=0.6873
1000Genomes	African	Sub	1322	(A)₁₀=0.3238	delA=0.6762
1000Genomes	East Asian	Sub	1008	(A)₁₀=0.2837	delA=0.7163
1000Genomes	Europe	Sub	1006	(A)₁₀=0.4553	delA=0.5447
1000Genomes	South Asian	Sub	978	(A)₁₀=0.192	delA=0.808
1000Genomes	American	Sub	694	(A)₁₀=0.297	delA=0.703
Genetic variation in the Estonian population	Estonian	Study-wide	4476	(A)₁₀=0.4439	delA=0.5561
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	(A)₁₀=0.4598	delA=0.5402
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	(A)₁₀=0.4625	delA=0.5375
Korean Genome Project	KOREAN	Study-wide	1832	(A)₁₀=0.2511	delA=0.7489
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	(A)₁₀=0.473	delA=0.527
Northern Sweden	ACPOP	Study-wide	598	(A)₁₀=0.510	delA=0.490
The Danish reference pan genome	Danish	Study-wide	40	(A)₁₀=0.50	delA=0.50

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 6	NC_000006.12:g.154227996_154227997del
GRCh38.p14 chr 6	NC_000006.12:g.154227997del
GRCh38.p14 chr 6	NC_000006.12:g.154227997dup
GRCh37.p13 chr 6	NC_000006.11:g.154549130_154549131del
GRCh37.p13 chr 6	NC_000006.11:g.154549131del
GRCh37.p13 chr 6	NC_000006.11:g.154549131dup
OPRM1 RefSeqGene (LRG_1007)	NG_021208.2:g.222496_222497del
OPRM1 RefSeqGene (LRG_1007)	NG_021208.2:g.222497del
OPRM1 RefSeqGene (LRG_1007)	NG_021208.2:g.222497dup

Gene: OPRM1, opioid receptor mu 1 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
OPRM1 transcript variant MOR-1O	NM_001008503.3:c.1165-186… NM_001008503.3:c.1165-18697_1165-18696del	N/A	Intron Variant
OPRM1 transcript variant MOR-1	NM_000914.5:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1A	NM_001008504.4:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1X	NM_001008505.2:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1i	NM_001145279.4:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1G1	NM_001145280.4:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1G2	NM_001145281.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1B1	NM_001145282.2:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1B2	NM_001145283.2:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1B3	NM_001145284.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1B4	NM_001145285.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1B5	NM_001145286.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1K1	NM_001145287.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1S	NM_001285522.1:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1A2	NM_001285523.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1CA	NM_001285524.1:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1K2	NM_001285526.2:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1W	NM_001285527.1:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-3	NM_001285528.2:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1Y3	NR_104348.1:n.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1Y2	NR_104349.1:n.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1Z	NR_104350.1:n.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant MOR-1Y	NR_104351.1:n.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant X2	XM_011535851.4:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant X3	XM_011535853.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant X5	XM_011535856.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant X7	XM_011535862.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant X1	XM_017010903.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant X4	XM_017010904.2:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant X8	XM_017010907.3:c.	N/A	Genic Downstream Transcript Variant
OPRM1 transcript variant X6	XM_047418837.1:c.	N/A	Genic Downstream Transcript Variant

Gene: IPCEF1, interaction protein for cytohesin exchange factors 1 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
IPCEF1 transcript variant 1	NM_001130699.2:c.247-4746… NM_001130699.2:c.247-4746_247-4745del	N/A	Intron Variant
IPCEF1 transcript variant 2	NM_001130700.2:c.247-4746… NM_001130700.2:c.247-4746_247-4745del	N/A	Intron Variant
IPCEF1 transcript variant 4	NM_001394799.1:c.247-4746… NM_001394799.1:c.247-4746_247-4745del	N/A	Intron Variant
IPCEF1 transcript variant 5	NM_001394800.1:c.247-4746… NM_001394800.1:c.247-4746_247-4745del	N/A	Intron Variant
IPCEF1 transcript variant 6	NM_001394801.1:c.247-4746… NM_001394801.1:c.247-4746_247-4745del	N/A	Intron Variant
IPCEF1 transcript variant 7	NM_001394802.1:c.244-4746… NM_001394802.1:c.244-4746_244-4745del	N/A	Intron Variant
IPCEF1 transcript variant 3	NM_015553.3:c.244-4746_24… NM_015553.3:c.244-4746_244-4745del	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(A)₁₀=	delAA	delA	dupA
GRCh38.p14 chr 6	NC_000006.12:g.154227988_154227997=	NC_000006.12:g.154227996_154227997del	NC_000006.12:g.154227997del	NC_000006.12:g.154227997dup
GRCh37.p13 chr 6	NC_000006.11:g.154549122_154549131=	NC_000006.11:g.154549130_154549131del	NC_000006.11:g.154549131del	NC_000006.11:g.154549131dup
OPRM1 RefSeqGene (LRG_1007)	NG_021208.2:g.222488_222497=	NG_021208.2:g.222496_222497del	NG_021208.2:g.222497del	NG_021208.2:g.222497dup
OPRM1 transcript variant MOR-1O	NM_001008503.1:c.1165-18705=	NM_001008503.1:c.1165-18697_1165-18696del	NM_001008503.1:c.1165-18696del	NM_001008503.1:c.1165-18696dup
OPRM1 transcript variant MOR-1O	NM_001008503.3:c.1165-18705=	NM_001008503.3:c.1165-18697_1165-18696del	NM_001008503.3:c.1165-18696del	NM_001008503.3:c.1165-18696dup
IPCEF1 transcript variant 1	NM_001130699.1:c.247-4745=	NM_001130699.1:c.247-4746_247-4745del	NM_001130699.1:c.247-4745del	NM_001130699.1:c.247-4745dup
IPCEF1 transcript variant 1	NM_001130699.2:c.247-4745=	NM_001130699.2:c.247-4746_247-4745del	NM_001130699.2:c.247-4745del	NM_001130699.2:c.247-4745dup
IPCEF1 transcript variant 2	NM_001130700.1:c.247-4745=	NM_001130700.1:c.247-4746_247-4745del	NM_001130700.1:c.247-4745del	NM_001130700.1:c.247-4745dup
IPCEF1 transcript variant 2	NM_001130700.2:c.247-4745=	NM_001130700.2:c.247-4746_247-4745del	NM_001130700.2:c.247-4745del	NM_001130700.2:c.247-4745dup
IPCEF1 transcript variant 4	NM_001394799.1:c.247-4745=	NM_001394799.1:c.247-4746_247-4745del	NM_001394799.1:c.247-4745del	NM_001394799.1:c.247-4745dup
IPCEF1 transcript variant 5	NM_001394800.1:c.247-4745=	NM_001394800.1:c.247-4746_247-4745del	NM_001394800.1:c.247-4745del	NM_001394800.1:c.247-4745dup
IPCEF1 transcript variant 6	NM_001394801.1:c.247-4745=	NM_001394801.1:c.247-4746_247-4745del	NM_001394801.1:c.247-4745del	NM_001394801.1:c.247-4745dup
IPCEF1 transcript variant 7	NM_001394802.1:c.244-4745=	NM_001394802.1:c.244-4746_244-4745del	NM_001394802.1:c.244-4745del	NM_001394802.1:c.244-4745dup
IPCEF1 transcript variant 3	NM_015553.2:c.244-4745=	NM_015553.2:c.244-4746_244-4745del	NM_015553.2:c.244-4745del	NM_015553.2:c.244-4745dup
IPCEF1 transcript variant 3	NM_015553.3:c.244-4745=	NM_015553.3:c.244-4746_244-4745del	NM_015553.3:c.244-4745del	NM_015553.3:c.244-4745dup
IPCEF1 transcript variant X1	XM_005266919.1:c.247-4745=	XM_005266919.1:c.247-4746_247-4745del	XM_005266919.1:c.247-4745del	XM_005266919.1:c.247-4745dup
IPCEF1 transcript variant X2	XM_005266920.1:c.247-4745=	XM_005266920.1:c.247-4746_247-4745del	XM_005266920.1:c.247-4745del	XM_005266920.1:c.247-4745dup
IPCEF1 transcript variant X3	XM_005266921.1:c.247-4745=	XM_005266921.1:c.247-4746_247-4745del	XM_005266921.1:c.247-4745del	XM_005266921.1:c.247-4745dup
IPCEF1 transcript variant X4	XM_005266922.1:c.247-4745=	XM_005266922.1:c.247-4746_247-4745del	XM_005266922.1:c.247-4745del	XM_005266922.1:c.247-4745dup
IPCEF1 transcript variant X5	XM_005266923.1:c.244-4745=	XM_005266923.1:c.244-4746_244-4745del	XM_005266923.1:c.244-4745del	XM_005266923.1:c.244-4745dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

62 SubSNP, 19 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	ABI	ss42787438	Dec 03, 2013 (138)
2	HGSV	ss77905123	Sep 08, 2015 (146)
3	HUMANGENOME_JCVI	ss95446343	Dec 05, 2013 (138)
4	BGI	ss104773268	Dec 01, 2009 (137)
5	GMI	ss155103373	Dec 01, 2009 (137)
6	BUSHMAN	ss193894659	Jul 04, 2010 (137)
7	GMI	ss287804703	May 09, 2011 (137)
8	GMI	ss288810958	May 04, 2012 (137)
9	PJP	ss295315074	May 09, 2011 (137)
10	1000GENOMES	ss326879936	May 09, 2011 (137)
11	1000GENOMES	ss326930077	May 09, 2011 (137)
12	1000GENOMES	ss327200466	May 09, 2011 (137)
13	LUNTER	ss551682321	Apr 25, 2013 (138)
14	LUNTER	ss551880931	Apr 25, 2013 (138)
15	LUNTER	ss553276660	Apr 25, 2013 (138)
16	SSMP	ss663666934	Apr 01, 2015 (144)
17	BILGI_BIOE	ss666379779	Apr 25, 2013 (138)
18	EVA-GONL	ss983681918	Aug 21, 2014 (142)
19	1000GENOMES	ss1376419691	Aug 21, 2014 (142)
20	DDI	ss1536528455	Apr 01, 2015 (144)
21	EVA_GENOME_DK	ss1576885946	Apr 01, 2015 (144)
22	EVA_UK10K_ALSPAC	ss1705432883	Apr 01, 2015 (144)
23	EVA_UK10K_TWINSUK	ss1705432905	Apr 01, 2015 (144)
24	HAMMER_LAB	ss1804749932	Sep 08, 2015 (146)
25	JJLAB	ss2030807213	Sep 14, 2016 (149)
26	SYSTEMSBIOZJU	ss2626553942	Nov 08, 2017 (151)
27	SWEGEN	ss3000224498	Nov 08, 2017 (151)
28	MCHAISSO	ss3064232827	Nov 08, 2017 (151)
29	MCHAISSO	ss3065112879	Nov 08, 2017 (151)
30	MCHAISSO	ss3066115302	Nov 08, 2017 (151)
31	BEROUKHIMLAB	ss3644226561	Oct 12, 2018 (152)
32	BIOINF_KMB_FNS_UNIBA	ss3645996384	Oct 12, 2018 (152)
33	URBANLAB	ss3648505598	Oct 12, 2018 (152)
34	EGCUT_WGS	ss3668162207	Jul 13, 2019 (153)
35	EVA_DECODE	ss3718617125	Jul 13, 2019 (153)
36	ACPOP	ss3734134610	Jul 13, 2019 (153)
37	PACBIO	ss3785665634	Jul 13, 2019 (153)
38	PACBIO	ss3790985676	Jul 13, 2019 (153)
39	PACBIO	ss3795865060	Jul 13, 2019 (153)
40	KHV_HUMAN_GENOMES	ss3809045911	Jul 13, 2019 (153)
41	EVA	ss3830279942	Apr 26, 2020 (154)
42	EVA	ss3838624995	Apr 26, 2020 (154)
43	EVA	ss3844074841	Apr 26, 2020 (154)
44	KOGIC	ss3960402537	Apr 26, 2020 (154)
45	GNOMAD	ss4154409407	Apr 26, 2021 (155)
46	TOPMED	ss4727809572	Apr 26, 2021 (155)
47	TOMMO_GENOMICS	ss5180700314	Apr 26, 2021 (155)
48	TOMMO_GENOMICS	ss5180700315	Apr 26, 2021 (155)
49	TOMMO_GENOMICS	ss5180700316	Apr 26, 2021 (155)
50	1000G_HIGH_COVERAGE	ss5270958531	Oct 14, 2022 (156)
51	HUGCELL_USP	ss5468348606	Oct 14, 2022 (156)
52	1000G_HIGH_COVERAGE	ss5558208159	Oct 14, 2022 (156)
53	SANFORD_IMAGENETICS	ss5641842250	Oct 14, 2022 (156)
54	TOMMO_GENOMICS	ss5719802129	Oct 14, 2022 (156)
55	TOMMO_GENOMICS	ss5719802130	Oct 14, 2022 (156)
56	TOMMO_GENOMICS	ss5719802131	Oct 14, 2022 (156)
57	YY_MCH	ss5808108984	Oct 14, 2022 (156)
58	EVA	ss5843227090	Oct 14, 2022 (156)
59	EVA	ss5855655956	Oct 14, 2022 (156)
60	EVA	ss5886657961	Oct 14, 2022 (156)
61	EVA	ss5970823336	Oct 14, 2022 (156)
62	EVA	ss5970823337	Oct 14, 2022 (156)
63	1000Genomes	NC_000006.11 - 154549122	Oct 12, 2018 (152)
64	1000Genomes_30x	NC_000006.12 - 154227988	Oct 14, 2022 (156)
65	The Avon Longitudinal Study of Parents and Children	NC_000006.11 - 154549122	Oct 12, 2018 (152)
66	Genetic variation in the Estonian population	NC_000006.11 - 154549122	Oct 12, 2018 (152)
67	The Danish reference pan genome	NC_000006.11 - 154549122	Apr 26, 2020 (154)
68	gnomAD - Genomes Submission ignored due to conflicting rows: Row 246121161 (NC_000006.12:154227987::A 5/138158) Row 246121162 (NC_000006.12:154227987:A: 81272/138056)	-	Apr 26, 2021 (155)
69	gnomAD - Genomes Submission ignored due to conflicting rows: Row 246121161 (NC_000006.12:154227987::A 5/138158) Row 246121162 (NC_000006.12:154227987:A: 81272/138056)	-	Apr 26, 2021 (155)
70	Genome of the Netherlands Release 5	NC_000006.11 - 154549122	Apr 26, 2020 (154)
71	Korean Genome Project	NC_000006.12 - 154227988	Apr 26, 2020 (154)
72	Northern Sweden	NC_000006.11 - 154549122	Jul 13, 2019 (153)
73	8.3KJPN Submission ignored due to conflicting rows: Row 38669621 (NC_000006.11:154549121:A: 13044/16760) Row 38669622 (NC_000006.11:154549121:AA: 1/16760) Row 38669623 (NC_000006.11:154549121::A 1/16760)	-	Apr 26, 2021 (155)
74	8.3KJPN Submission ignored due to conflicting rows: Row 38669621 (NC_000006.11:154549121:A: 13044/16760) Row 38669622 (NC_000006.11:154549121:AA: 1/16760) Row 38669623 (NC_000006.11:154549121::A 1/16760)	-	Apr 26, 2021 (155)
75	8.3KJPN Submission ignored due to conflicting rows: Row 38669621 (NC_000006.11:154549121:A: 13044/16760) Row 38669622 (NC_000006.11:154549121:AA: 1/16760) Row 38669623 (NC_000006.11:154549121::A 1/16760)	-	Apr 26, 2021 (155)
76	14KJPN Submission ignored due to conflicting rows: Row 53639233 (NC_000006.12:154227987:A: 22024/28258) Row 53639234 (NC_000006.12:154227987:AA: 1/28258) Row 53639235 (NC_000006.12:154227987::A 2/28258)	-	Oct 14, 2022 (156)
77	14KJPN Submission ignored due to conflicting rows: Row 53639233 (NC_000006.12:154227987:A: 22024/28258) Row 53639234 (NC_000006.12:154227987:AA: 1/28258) Row 53639235 (NC_000006.12:154227987::A 2/28258)	-	Oct 14, 2022 (156)
78	14KJPN Submission ignored due to conflicting rows: Row 53639233 (NC_000006.12:154227987:A: 22024/28258) Row 53639234 (NC_000006.12:154227987:AA: 1/28258) Row 53639235 (NC_000006.12:154227987::A 2/28258)	-	Oct 14, 2022 (156)
79	TopMed	NC_000006.12 - 154227988	Apr 26, 2021 (155)
80	UK 10K study - Twins	NC_000006.11 - 154549122	Oct 12, 2018 (152)
81	ALFA	NC_000006.12 - 154227988	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs11325737	May 11, 2012 (137)
rs71779843	May 11, 2012 (137)
rs77669754	May 11, 2012 (137)
rs145487007	May 04, 2012 (137)
rs371529604	May 13, 2013 (138)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss5180700315	NC_000006.11:154549121:AA:	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAA	(self)
ss5719802130	NC_000006.12:154227987:AA:	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAA
ss77905123	NC_000006.9:154641243:A:	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAA	(self)
ss288810958, ss295315074, ss326879936, ss326930077, ss327200466, ss551682321, ss551880931, ss553276660	NC_000006.10:154590813:A:	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAA	(self)
34862492, 19439583, 13900455, 1118937, 8652627, 7419475, 19439583, ss663666934, ss666379779, ss983681918, ss1376419691, ss1536528455, ss1576885946, ss1705432883, ss1705432905, ss1804749932, ss2030807213, ss2626553942, ss3000224498, ss3644226561, ss3668162207, ss3734134610, ss3785665634, ss3790985676, ss3795865060, ss3830279942, ss3838624995, ss5180700314, ss5641842250, ss5843227090, ss5970823336, ss5970823337	NC_000006.11:154549121:A:	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAA	(self)
45734094, 16780538, 565187130, ss3064232827, ss3065112879, ss3066115302, ss3645996384, ss3648505598, ss3718617125, ss3809045911, ss3844074841, ss3960402537, ss4727809572, ss5270958531, ss5468348606, ss5558208159, ss5719802129, ss5808108984, ss5855655956, ss5886657961	NC_000006.12:154227987:A:	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAA	(self)
4332177246	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAA	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAA	(self)
ss155103373, ss287804703	NT_025741.15:58718578:A:	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAA	(self)
ss104773268	NT_025741.15:58718586:A:	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAA	(self)
ss42787438, ss95446343	NT_025741.15:58718587:A:	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAA	(self)
ss193894659	NT_025741.16:93998053:A:	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAA	(self)
ss5180700316	NC_000006.11:154549121::A	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAAAA	(self)
ss4154409407, ss5719802131	NC_000006.12:154227987::A	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAAAA	(self)
4332177246	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAAAA	NC_000006.12:154227987:AAAAAAAAAA:… NC_000006.12:154227987:AAAAAAAAAA:AAAAAAAAAAA	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs11289794

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs11289794