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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1450691660

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr9:122291766-122291771 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
delAAGGC
Variation Type
Indel Insertion and Deletion
Frequency
delAAGGC=0.000004 (1/251366, GnomAD_exome)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
MRRF : Frameshift Variant
Publications
0 citations
Genomic View
See rs on genome
Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
gnomAD - Exomes Global Study-wide 251366 CAAGGC=0.999996 delAAGGC=0.000004
gnomAD - Exomes European Sub 135304 CAAGGC=0.999993 delAAGGC=0.000007
gnomAD - Exomes Asian Sub 49010 CAAGGC=1.00000 delAAGGC=0.00000
gnomAD - Exomes American Sub 34584 CAAGGC=1.00000 delAAGGC=0.00000
gnomAD - Exomes African Sub 16256 CAAGGC=1.00000 delAAGGC=0.00000
gnomAD - Exomes Ashkenazi Jewish Sub 10076 CAAGGC=1.00000 delAAGGC=0.00000
gnomAD - Exomes Other Sub 6136 CAAGGC=1.0000 delAAGGC=0.0000
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 9 NC_000009.12:g.122291767_122291771del
GRCh37.p13 chr 9 NC_000009.11:g.125054046_125054050del
MRRF RefSeqGene NG_051806.1:g.32165_32169del
Gene: MRRF, mitochondrial ribosome recycling factor (plus strand)
Molecule type Change Amino acid[Codon] SO Term
MRRF transcript variant 7 NM_001346345.2:c.459+6480…

NM_001346345.2:c.459+6480_459+6484del

N/A Intron Variant
MRRF transcript variant 1 NM_138777.5:c.478_482del K [AA] > Y [T] Coding Sequence Variant
ribosome-recycling factor, mitochondrial isoform 1 precursor NP_620132.1:p.Lys160fs K (Lys) > Y (Tyr) Frameshift Variant
MRRF transcript variant 4 NM_001346339.2:c.541_545d…

NM_001346339.2:c.541_545del

K [AA] > Y [T] Coding Sequence Variant
ribosome-recycling factor, mitochondrial isoform 4 NP_001333268.1:p.Lys181fs K (Lys) > Y (Tyr) Frameshift Variant
MRRF transcript variant 2 NM_199177.4:c.478_482del K [AA] > Y [T] Coding Sequence Variant
ribosome-recycling factor, mitochondrial isoform 2 precursor NP_954646.1:p.Lys160fs K (Lys) > Y (Tyr) Frameshift Variant
MRRF transcript variant 5 NM_001346341.2:c.478_482d…

NM_001346341.2:c.478_482del

K [AA] > Y [T] Coding Sequence Variant
ribosome-recycling factor, mitochondrial isoform 1 precursor NP_001333270.1:p.Lys160fs K (Lys) > Y (Tyr) Frameshift Variant
MRRF transcript variant 6 NM_001346343.2:c.346_350d…

NM_001346343.2:c.346_350del

K [AA] > Y [T] Coding Sequence Variant
ribosome-recycling factor, mitochondrial isoform 5 NP_001333272.1:p.Lys116fs K (Lys) > Y (Tyr) Frameshift Variant
MRRF transcript variant 8 NM_001346347.2:c.205_209d…

NM_001346347.2:c.205_209del

K [AA] > Y [T] Coding Sequence Variant
ribosome-recycling factor, mitochondrial isoform 7 NP_001333276.1:p.Lys69fs K (Lys) > Y (Tyr) Frameshift Variant
MRRF transcript variant 3 NM_001173512.3:c.322_326d…

NM_001173512.3:c.322_326del

K [AA] > Y [T] Coding Sequence Variant
ribosome-recycling factor, mitochondrial isoform 3 precursor NP_001166983.1:p.Lys108fs K (Lys) > Y (Tyr) Frameshift Variant
MRRF transcript variant 9 NR_144421.2:n.858_862del N/A Non Coding Transcript Variant
MRRF transcript variant X3 XM_047424067.1:c.522+6480…

XM_047424067.1:c.522+6480_522+6484del

N/A Intron Variant
MRRF transcript variant X7 XM_047424068.1:c. N/A Genic Downstream Transcript Variant
MRRF transcript variant X1 XM_011519183.3:c.541_545d…

XM_011519183.3:c.541_545del

K [AA] > Y [T] Coding Sequence Variant
ribosome-recycling factor, mitochondrial isoform X1 XP_011517485.1:p.Lys181fs K (Lys) > Y (Tyr) Frameshift Variant
MRRF transcript variant X2 XM_011519185.4:c.541_545d…

XM_011519185.4:c.541_545del

K [AA] > Y [T] Coding Sequence Variant
ribosome-recycling factor, mitochondrial isoform X2 XP_011517487.1:p.Lys181fs K (Lys) > Y (Tyr) Frameshift Variant
MRRF transcript variant X4 XR_007061372.1:n.882_886d…

XR_007061372.1:n.882_886del

N/A Non Coding Transcript Variant
MRRF transcript variant X5 XR_007061373.1:n.1177_118…

XR_007061373.1:n.1177_1181del

N/A Non Coding Transcript Variant
MRRF transcript variant X6 XR_007061374.1:n.858_862d…

XR_007061374.1:n.858_862del

N/A Non Coding Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement CAAGGC= delAAGGC
GRCh38.p14 chr 9 NC_000009.12:g.122291766_122291771= NC_000009.12:g.122291767_122291771del
GRCh37.p13 chr 9 NC_000009.11:g.125054045_125054050= NC_000009.11:g.125054046_125054050del
MRRF RefSeqGene NG_051806.1:g.32164_32169= NG_051806.1:g.32165_32169del
MRRF transcript variant 1 NM_138777.5:c.477_482= NM_138777.5:c.478_482del
MRRF transcript variant 1 NM_138777.4:c.477_482= NM_138777.4:c.478_482del
MRRF transcript variant 1 NM_138777.3:c.477_482= NM_138777.3:c.478_482del
MRRF transcript variant 2 NM_199177.4:c.477_482= NM_199177.4:c.478_482del
MRRF transcript variant 2 NM_199177.3:c.477_482= NM_199177.3:c.478_482del
MRRF transcript variant 2 NM_199177.2:c.477_482= NM_199177.2:c.478_482del
MRRF transcript variant 3 NM_001173512.3:c.321_326= NM_001173512.3:c.322_326del
MRRF transcript variant 3 NM_001173512.2:c.321_326= NM_001173512.2:c.322_326del
MRRF transcript variant 3 NM_001173512.1:c.321_326= NM_001173512.1:c.322_326del
MRRF transcript variant 4 NM_001346339.2:c.540_545= NM_001346339.2:c.541_545del
MRRF transcript variant 4 NM_001346339.1:c.540_545= NM_001346339.1:c.541_545del
MRRF transcript variant 9 NR_144421.2:n.857_862= NR_144421.2:n.858_862del
MRRF transcript variant 9 NR_144421.1:n.1136_1141= NR_144421.1:n.1137_1141del
MRRF transcript variant 5 NM_001346341.2:c.477_482= NM_001346341.2:c.478_482del
MRRF transcript variant 5 NM_001346341.1:c.477_482= NM_001346341.1:c.478_482del
MRRF transcript variant 6 NM_001346343.2:c.345_350= NM_001346343.2:c.346_350del
MRRF transcript variant 6 NM_001346343.1:c.345_350= NM_001346343.1:c.346_350del
MRRF transcript variant 8 NM_001346347.2:c.204_209= NM_001346347.2:c.205_209del
MRRF transcript variant 8 NM_001346347.1:c.204_209= NM_001346347.1:c.205_209del
MRRF transcript variant X2 XM_011519185.4:c.540_545= XM_011519185.4:c.541_545del
MRRF transcript variant X2 XM_011519185.3:c.540_545= XM_011519185.3:c.541_545del
MRRF transcript variant X4 XM_011519185.2:c.540_545= XM_011519185.2:c.541_545del
MRRF transcript variant X4 XM_011519185.1:c.540_545= XM_011519185.1:c.541_545del
MRRF transcript variant X1 XM_011519183.3:c.540_545= XM_011519183.3:c.541_545del
MRRF transcript variant X1 XM_011519183.2:c.540_545= XM_011519183.2:c.541_545del
MRRF transcript variant X2 XM_011519183.1:c.540_545= XM_011519183.1:c.541_545del
MRRF transcript variant 3 NM_199176.1:c.*265_*270= NM_199176.1:c.*266_*270del
MRRF transcript variant X5 XR_007061373.1:n.1176_1181= XR_007061373.1:n.1177_1181del
MRRF transcript variant X4 XR_007061372.1:n.881_886= XR_007061372.1:n.882_886del
MRRF transcript variant X6 XR_007061374.1:n.857_862= XR_007061374.1:n.858_862del
ribosome-recycling factor, mitochondrial isoform 1 precursor NP_620132.1:p.Ile159_Ala161= NP_620132.1:p.Lys160fs
ribosome-recycling factor, mitochondrial isoform 2 precursor NP_954646.1:p.Ile159_Ala161= NP_954646.1:p.Lys160fs
ribosome-recycling factor, mitochondrial isoform 3 precursor NP_001166983.1:p.Ile107_Ala109= NP_001166983.1:p.Lys108fs
ribosome-recycling factor, mitochondrial isoform 4 NP_001333268.1:p.Ile180_Ala182= NP_001333268.1:p.Lys181fs
ribosome-recycling factor, mitochondrial isoform 1 precursor NP_001333270.1:p.Ile159_Ala161= NP_001333270.1:p.Lys160fs
ribosome-recycling factor, mitochondrial isoform 5 NP_001333272.1:p.Ile115_Ala117= NP_001333272.1:p.Lys116fs
ribosome-recycling factor, mitochondrial isoform 7 NP_001333276.1:p.Ile68_Ala70= NP_001333276.1:p.Lys69fs
ribosome-recycling factor, mitochondrial isoform X2 XP_011517487.1:p.Ile180_Ala182= XP_011517487.1:p.Lys181fs
ribosome-recycling factor, mitochondrial isoform X1 XP_011517485.1:p.Ile180_Ala182= XP_011517485.1:p.Lys181fs
MRRF transcript variant 7 NM_001346345.2:c.459+6479= NM_001346345.2:c.459+6480_459+6484del
MRRF transcript variant X3 XM_047424067.1:c.522+6479= XM_047424067.1:c.522+6480_522+6484del
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

1 SubSNP, 1 Frequency submissions
No Submitter Submission ID Date (Build)
1 GNOMAD ss2737848244 Nov 08, 2017 (151)
2 gnomAD - Exomes NC_000009.11 - 125054045 Jul 13, 2019 (153)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
7035952, ss2737848244 NC_000009.11:125054044:CAAGG: NC_000009.12:122291765:CAAGGC:C (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1450691660

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d