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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1470658955

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr10:122424900-122424904 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
delAAT
Variation Type
Indel Insertion and Deletion
Frequency
delAAT=0.000015 (4/264690, TOPMED)
delAAT=0.000007 (1/140076, GnomAD)
delAAT=0.00000 (0/11862, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
PLEKHA1 : Inframe Deletion
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 11862 ATAAT=1.00000 AT=0.00000 1.0 0.0 0.0 N/A
European Sub 7618 ATAAT=1.0000 AT=0.0000 1.0 0.0 0.0 N/A
African Sub 2816 ATAAT=1.0000 AT=0.0000 1.0 0.0 0.0 N/A
African Others Sub 108 ATAAT=1.000 AT=0.000 1.0 0.0 0.0 N/A
African American Sub 2708 ATAAT=1.0000 AT=0.0000 1.0 0.0 0.0 N/A
Asian Sub 108 ATAAT=1.000 AT=0.000 1.0 0.0 0.0 N/A
East Asian Sub 84 ATAAT=1.00 AT=0.00 1.0 0.0 0.0 N/A
Other Asian Sub 24 ATAAT=1.00 AT=0.00 1.0 0.0 0.0 N/A
Latin American 1 Sub 146 ATAAT=1.000 AT=0.000 1.0 0.0 0.0 N/A
Latin American 2 Sub 610 ATAAT=1.000 AT=0.000 1.0 0.0 0.0 N/A
South Asian Sub 94 ATAAT=1.00 AT=0.00 1.0 0.0 0.0 N/A
Other Sub 470 ATAAT=1.000 AT=0.000 1.0 0.0 0.0 N/A


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 ATAAT=0.999985 delAAT=0.000015
gnomAD - Genomes Global Study-wide 140076 ATAAT=0.999993 delAAT=0.000007
gnomAD - Genomes European Sub 75852 ATAAT=1.00000 delAAT=0.00000
gnomAD - Genomes African Sub 41984 ATAAT=1.00000 delAAT=0.00000
gnomAD - Genomes American Sub 13638 ATAAT=1.00000 delAAT=0.00000
gnomAD - Genomes Ashkenazi Jewish Sub 3322 ATAAT=1.0000 delAAT=0.0000
gnomAD - Genomes East Asian Sub 3132 ATAAT=0.9997 delAAT=0.0003
gnomAD - Genomes Other Sub 2148 ATAAT=1.0000 delAAT=0.0000
Allele Frequency Aggregator Total Global 11862 ATAAT=1.00000 delAAT=0.00000
Allele Frequency Aggregator European Sub 7618 ATAAT=1.0000 delAAT=0.0000
Allele Frequency Aggregator African Sub 2816 ATAAT=1.0000 delAAT=0.0000
Allele Frequency Aggregator Latin American 2 Sub 610 ATAAT=1.000 delAAT=0.000
Allele Frequency Aggregator Other Sub 470 ATAAT=1.000 delAAT=0.000
Allele Frequency Aggregator Latin American 1 Sub 146 ATAAT=1.000 delAAT=0.000
Allele Frequency Aggregator Asian Sub 108 ATAAT=1.000 delAAT=0.000
Allele Frequency Aggregator South Asian Sub 94 ATAAT=1.00 delAAT=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 10 NC_000010.11:g.122424902_122424904del
GRCh37.p13 chr 10 NC_000010.10:g.124184418_124184420del
PLEKHA1 RefSeqGene NG_027823.1:g.55325_55327del
Gene: PLEKHA1, pleckstrin homology domain containing A1 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
PLEKHA1 transcript variant 30 NM_001377258.1:c.746+639_…

NM_001377258.1:c.746+639_746+641del

N/A Intron Variant
PLEKHA1 transcript variant 4 NM_001330178.2:c.753_755d…

NM_001330178.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001317107.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 14 NM_001377242.1:c.753_755d…

NM_001377242.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364171.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 28 NM_001377256.1:c.627_629d…

NM_001377256.1:c.627_629del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 12 NP_001364185.1:p.Ile209del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 20 NM_001377248.1:c.753_755d…

NM_001377248.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 6 NP_001364177.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 24 NM_001377252.1:c.609_611d…

NM_001377252.1:c.609_611del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364181.1:p.Ile203del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 1 NM_021622.5:c.753_755del I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_067635.2:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 17 NM_001377245.1:c.753_755d…

NM_001377245.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 4 NP_001364174.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 3 NM_001195608.2:c.753_755d…

NM_001195608.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001182537.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 23 NM_001377251.1:c.720_722d…

NM_001377251.1:c.720_722del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 9 NP_001364180.1:p.Ile240del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 18 NM_001377246.1:c.753_755d…

NM_001377246.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 4 NP_001364175.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 29 NM_001377257.1:c.609_611d…

NM_001377257.1:c.609_611del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 13 NP_001364186.1:p.Ile203del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 22 NM_001377250.1:c.744_746d…

NM_001377250.1:c.744_746del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 8 NP_001364179.1:p.Ile248del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 21 NM_001377249.1:c.693_695d…

NM_001377249.1:c.693_695del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 7 NP_001364178.1:p.Ile231del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 12 NM_001377240.1:c.753_755d…

NM_001377240.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364169.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 26 NM_001377254.1:c.609_611d…

NM_001377254.1:c.609_611del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364183.1:p.Ile203del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 16 NM_001377244.1:c.753_755d…

NM_001377244.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364173.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 19 NM_001377247.1:c.720_722d…

NM_001377247.1:c.720_722del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 5 NP_001364176.1:p.Ile240del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 5 NM_001377230.1:c.753_755d…

NM_001377230.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364159.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 25 NM_001377253.1:c.609_611d…

NM_001377253.1:c.609_611del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364182.1:p.Ile203del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 7 NM_001377232.1:c.753_755d…

NM_001377232.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364161.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 8 NM_001377234.1:c.753_755d…

NM_001377234.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364163.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 11 NM_001377238.1:c.753_755d…

NM_001377238.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001364167.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 15 NM_001377243.1:c.753_755d…

NM_001377243.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364172.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 13 NM_001377241.1:c.753_755d…

NM_001377241.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364170.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 27 NM_001377255.1:c.609_611d…

NM_001377255.1:c.609_611del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 11 NP_001364184.1:p.Ile203del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 10 NM_001377237.1:c.753_755d…

NM_001377237.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001364166.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 6 NM_001377231.1:c.753_755d…

NM_001377231.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364160.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 9 NM_001377235.1:c.753_755d…

NM_001377235.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364164.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 2 NM_001001974.4:c.753_755d…

NM_001001974.4:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001001974.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant 34 NR_165164.1:n.896_898del N/A Non Coding Transcript Variant
PLEKHA1 transcript variant 35 NR_165165.1:n.990_992del N/A Non Coding Transcript Variant
PLEKHA1 transcript variant 32 NR_165161.1:n.938_940del N/A Non Coding Transcript Variant
PLEKHA1 transcript variant 33 NR_165162.1:n.844_846del N/A Non Coding Transcript Variant
PLEKHA1 transcript variant 31 NR_165160.1:n.990_992del N/A Non Coding Transcript Variant
PLEKHA1 transcript variant X1 XM_017016478.3:c.753_755d…

XM_017016478.3:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_016871967.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X2 XM_011540018.2:c.753_755d…

XM_011540018.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538320.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X3 XM_011540017.2:c.753_755d…

XM_011540017.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538319.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X4 XM_011540021.2:c.753_755d…

XM_011540021.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538323.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X5 XM_024448109.2:c.753_755d…

XM_024448109.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303877.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X6 XM_047425598.1:c.753_755d…

XM_047425598.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281554.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X7 XM_047425599.1:c.753_755d…

XM_047425599.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281555.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X8 XM_024448108.2:c.753_755d…

XM_024448108.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303876.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X9 XM_011540019.2:c.753_755d…

XM_011540019.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538321.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X10 XM_024448110.2:c.753_755d…

XM_024448110.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303878.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X11 XM_011540024.2:c.753_755d…

XM_011540024.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538326.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X12 XM_011540022.2:c.753_755d…

XM_011540022.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538324.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X13 XM_024448107.2:c.753_755d…

XM_024448107.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303875.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X14 XM_047425600.1:c.753_755d…

XM_047425600.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281556.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X15 XM_047425602.1:c.753_755d…

XM_047425602.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281558.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X16 XM_017016479.3:c.753_755d…

XM_017016479.3:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X2 XP_016871968.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X17 XM_047425603.1:c.753_755d…

XM_047425603.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281559.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X18 XM_024448113.2:c.753_755d…

XM_024448113.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_024303881.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X19 XM_017016482.2:c.753_755d…

XM_017016482.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_016871971.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X20 XM_047425604.1:c.753_755d…

XM_047425604.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281560.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X21 XM_047425605.1:c.753_755d…

XM_047425605.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281561.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X22 XM_024448114.2:c.753_755d…

XM_024448114.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_024303882.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X23 XM_047425606.1:c.753_755d…

XM_047425606.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281562.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X24 XM_017016484.2:c.753_755d…

XM_017016484.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_016871973.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X25 XM_017016483.2:c.753_755d…

XM_017016483.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_016871972.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X26 XM_047425607.1:c.753_755d…

XM_047425607.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281563.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X27 XM_047425608.1:c.753_755d…

XM_047425608.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281564.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X28 XM_047425609.1:c.753_755d…

XM_047425609.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281565.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X29 XM_047425610.1:c.753_755d…

XM_047425610.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281566.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X30 XM_047425611.1:c.753_755d…

XM_047425611.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281567.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X31 XM_017016487.2:c.753_755d…

XM_017016487.2:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X5 XP_016871976.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X32 XM_047425612.1:c.753_755d…

XM_047425612.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X5 XP_047281568.1:p.Ile251del I (Ile) > () Inframe Deletion
PLEKHA1 transcript variant X33 XM_047425613.1:c.753_755d…

XM_047425613.1:c.753_755del

I [ATAA] > [ATG] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X5 XP_047281569.1:p.Ile251del I (Ile) > () Inframe Deletion
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Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
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Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement ATAAT= delAAT
GRCh38.p14 chr 10 NC_000010.11:g.122424900_122424904= NC_000010.11:g.122424902_122424904del
GRCh37.p13 chr 10 NC_000010.10:g.124184416_124184420= NC_000010.10:g.124184418_124184420del
PLEKHA1 RefSeqGene NG_027823.1:g.55323_55327= NG_027823.1:g.55325_55327del
PLEKHA1 transcript variant 1 NM_021622.4:c.751_755= NM_021622.4:c.753_755del
PLEKHA1 transcript variant 1 NM_021622.5:c.751_755= NM_021622.5:c.753_755del
PLEKHA1 transcript variant 2 NM_001001974.2:c.751_755= NM_001001974.2:c.753_755del
PLEKHA1 transcript variant 2 NM_001001974.4:c.751_755= NM_001001974.4:c.753_755del
PLEKHA1 transcript variant 2 NM_001001974.3:c.751_755= NM_001001974.3:c.753_755del
PLEKHA1 transcript variant 3 NM_001195608.1:c.751_755= NM_001195608.1:c.753_755del
PLEKHA1 transcript variant 3 NM_001195608.2:c.751_755= NM_001195608.2:c.753_755del
PLEKHA1 transcript variant X1 XM_017016478.3:c.751_755= XM_017016478.3:c.753_755del
PLEKHA1 transcript variant X1 XM_017016478.2:c.751_755= XM_017016478.2:c.753_755del
PLEKHA1 transcript variant X1 XM_017016478.1:c.751_755= XM_017016478.1:c.753_755del
PLEKHA1 transcript variant X16 XM_017016479.3:c.751_755= XM_017016479.3:c.753_755del
PLEKHA1 transcript variant X12 XM_017016479.2:c.751_755= XM_017016479.2:c.753_755del
PLEKHA1 transcript variant X8 XM_017016479.1:c.751_755= XM_017016479.1:c.753_755del
PLEKHA1 transcript variant X18 XM_024448113.2:c.751_755= XM_024448113.2:c.753_755del
PLEKHA1 transcript variant X18 XM_024448113.1:c.751_755= XM_024448113.1:c.753_755del
PLEKHA1 transcript variant X9 XM_011540019.2:c.751_755= XM_011540019.2:c.753_755del
PLEKHA1 transcript variant X5 XM_011540019.1:c.751_755= XM_011540019.1:c.753_755del
PLEKHA1 transcript variant X11 XM_011540024.2:c.751_755= XM_011540024.2:c.753_755del
PLEKHA1 transcript variant X11 XM_011540024.1:c.751_755= XM_011540024.1:c.753_755del
PLEKHA1 transcript variant X13 XM_024448107.2:c.751_755= XM_024448107.2:c.753_755del
PLEKHA1 transcript variant X4 XM_024448107.1:c.751_755= XM_024448107.1:c.753_755del
PLEKHA1 transcript variant X8 XM_024448108.2:c.751_755= XM_024448108.2:c.753_755del
PLEKHA1 transcript variant X6 XM_024448108.1:c.751_755= XM_024448108.1:c.753_755del
PLEKHA1 transcript variant X2 XM_011540018.2:c.751_755= XM_011540018.2:c.753_755del
PLEKHA1 transcript variant X3 XM_011540018.1:c.751_755= XM_011540018.1:c.753_755del
PLEKHA1 transcript variant X10 XM_024448110.2:c.751_755= XM_024448110.2:c.753_755del
PLEKHA1 transcript variant X10 XM_024448110.1:c.751_755= XM_024448110.1:c.753_755del
PLEKHA1 transcript variant X3 XM_011540017.2:c.751_755= XM_011540017.2:c.753_755del
PLEKHA1 transcript variant X2 XM_011540017.1:c.751_755= XM_011540017.1:c.753_755del
PLEKHA1 transcript variant X12 XM_011540022.2:c.751_755= XM_011540022.2:c.753_755del
PLEKHA1 transcript variant X9 XM_011540022.1:c.751_755= XM_011540022.1:c.753_755del
PLEKHA1 transcript variant X25 XM_017016483.2:c.751_755= XM_017016483.2:c.753_755del
PLEKHA1 transcript variant X22 XM_017016483.1:c.751_755= XM_017016483.1:c.753_755del
PLEKHA1 transcript variant X24 XM_017016484.2:c.751_755= XM_017016484.2:c.753_755del
PLEKHA1 transcript variant X23 XM_017016484.1:c.751_755= XM_017016484.1:c.753_755del
PLEKHA1 transcript variant X31 XM_017016487.2:c.751_755= XM_017016487.2:c.753_755del
PLEKHA1 transcript variant X26 XM_017016487.1:c.751_755= XM_017016487.1:c.753_755del
PLEKHA1 transcript variant X22 XM_024448114.2:c.751_755= XM_024448114.2:c.753_755del
PLEKHA1 transcript variant X20 XM_024448114.1:c.751_755= XM_024448114.1:c.753_755del
PLEKHA1 transcript variant X5 XM_024448109.2:c.751_755= XM_024448109.2:c.753_755del
PLEKHA1 transcript variant X8 XM_024448109.1:c.751_755= XM_024448109.1:c.753_755del
PLEKHA1 transcript variant X19 XM_017016482.2:c.751_755= XM_017016482.2:c.753_755del
PLEKHA1 transcript variant X19 XM_017016482.1:c.751_755= XM_017016482.1:c.753_755del
PLEKHA1 transcript variant X4 XM_011540021.2:c.751_755= XM_011540021.2:c.753_755del
PLEKHA1 transcript variant X7 XM_011540021.1:c.751_755= XM_011540021.1:c.753_755del
PLEKHA1 transcript variant 4 NM_001330178.2:c.751_755= NM_001330178.2:c.753_755del
PLEKHA1 transcript variant 4 NM_001330178.1:c.751_755= NM_001330178.1:c.753_755del
PLEKHA1 transcript variant 6 NM_001377231.1:c.751_755= NM_001377231.1:c.753_755del
PLEKHA1 transcript variant 14 NM_001377242.1:c.751_755= NM_001377242.1:c.753_755del
PLEKHA1 transcript variant X15 XM_047425602.1:c.751_755= XM_047425602.1:c.753_755del
PLEKHA1 transcript variant X17 XM_047425603.1:c.751_755= XM_047425603.1:c.753_755del
PLEKHA1 transcript variant X26 XM_047425607.1:c.751_755= XM_047425607.1:c.753_755del
PLEKHA1 transcript variant X20 XM_047425604.1:c.751_755= XM_047425604.1:c.753_755del
PLEKHA1 transcript variant 15 NM_001377243.1:c.751_755= NM_001377243.1:c.753_755del
PLEKHA1 transcript variant X27 XM_047425608.1:c.751_755= XM_047425608.1:c.753_755del
PLEKHA1 transcript variant 7 NM_001377232.1:c.751_755= NM_001377232.1:c.753_755del
PLEKHA1 transcript variant 8 NM_001377234.1:c.751_755= NM_001377234.1:c.753_755del
PLEKHA1 transcript variant 16 NM_001377244.1:c.751_755= NM_001377244.1:c.753_755del
PLEKHA1 transcript variant X7 XM_047425599.1:c.751_755= XM_047425599.1:c.753_755del
PLEKHA1 transcript variant X29 XM_047425610.1:c.751_755= XM_047425610.1:c.753_755del
PLEKHA1 transcript variant X6 XM_047425598.1:c.751_755= XM_047425598.1:c.753_755del
PLEKHA1 transcript variant X32 XM_047425612.1:c.751_755= XM_047425612.1:c.753_755del
PLEKHA1 transcript variant X14 XM_047425600.1:c.751_755= XM_047425600.1:c.753_755del
PLEKHA1 transcript variant 9 NM_001377235.1:c.751_755= NM_001377235.1:c.753_755del
PLEKHA1 transcript variant 11 NM_001377238.1:c.751_755= NM_001377238.1:c.753_755del
PLEKHA1 transcript variant X30 XM_047425611.1:c.751_755= XM_047425611.1:c.753_755del
PLEKHA1 transcript variant X33 XM_047425613.1:c.751_755= XM_047425613.1:c.753_755del
PLEKHA1 transcript variant 31 NR_165160.1:n.988_992= NR_165160.1:n.990_992del
PLEKHA1 transcript variant 26 NM_001377254.1:c.607_611= NM_001377254.1:c.609_611del
PLEKHA1 transcript variant 10 NM_001377237.1:c.751_755= NM_001377237.1:c.753_755del
PLEKHA1 transcript variant 18 NM_001377246.1:c.751_755= NM_001377246.1:c.753_755del
PLEKHA1 transcript variant X28 XM_047425609.1:c.751_755= XM_047425609.1:c.753_755del
PLEKHA1 transcript variant 20 NM_001377248.1:c.751_755= NM_001377248.1:c.753_755del
PLEKHA1 transcript variant X23 XM_047425606.1:c.751_755= XM_047425606.1:c.753_755del
PLEKHA1 transcript variant 35 NR_165165.1:n.988_992= NR_165165.1:n.990_992del
PLEKHA1 transcript variant X21 XM_047425605.1:c.751_755= XM_047425605.1:c.753_755del
PLEKHA1 transcript variant 32 NR_165161.1:n.936_940= NR_165161.1:n.938_940del
PLEKHA1 transcript variant 12 NM_001377240.1:c.751_755= NM_001377240.1:c.753_755del
PLEKHA1 transcript variant 23 NM_001377251.1:c.718_722= NM_001377251.1:c.720_722del
PLEKHA1 transcript variant 17 NM_001377245.1:c.751_755= NM_001377245.1:c.753_755del
PLEKHA1 transcript variant 5 NM_001377230.1:c.751_755= NM_001377230.1:c.753_755del
PLEKHA1 transcript variant 21 NM_001377249.1:c.691_695= NM_001377249.1:c.693_695del
PLEKHA1 transcript variant 28 NM_001377256.1:c.625_629= NM_001377256.1:c.627_629del
PLEKHA1 transcript variant 13 NM_001377241.1:c.751_755= NM_001377241.1:c.753_755del
PLEKHA1 transcript variant 19 NM_001377247.1:c.718_722= NM_001377247.1:c.720_722del
PLEKHA1 transcript variant 22 NM_001377250.1:c.742_746= NM_001377250.1:c.744_746del
PLEKHA1 transcript variant 34 NR_165164.1:n.894_898= NR_165164.1:n.896_898del
PLEKHA1 transcript variant 27 NM_001377255.1:c.607_611= NM_001377255.1:c.609_611del
PLEKHA1 transcript variant 33 NR_165162.1:n.842_846= NR_165162.1:n.844_846del
PLEKHA1 transcript variant 29 NM_001377257.1:c.607_611= NM_001377257.1:c.609_611del
PLEKHA1 transcript variant 25 NM_001377253.1:c.607_611= NM_001377253.1:c.609_611del
PLEKHA1 transcript variant 24 NM_001377252.1:c.607_611= NM_001377252.1:c.609_611del
pleckstrin homology domain-containing family A member 1 isoform 1 NP_067635.2:p.Ile251_Met252= NP_067635.2:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001001974.1:p.Ile251_Met252= NP_001001974.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001182537.1:p.Ile251_Met252= NP_001182537.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_016871967.1:p.Ile251_Met252= XP_016871967.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X2 XP_016871968.1:p.Ile251_Met252= XP_016871968.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X3 XP_024303881.1:p.Ile251_Met252= XP_024303881.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538321.1:p.Ile251_Met252= XP_011538321.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538326.1:p.Ile251_Met252= XP_011538326.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303875.1:p.Ile251_Met252= XP_024303875.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303876.1:p.Ile251_Met252= XP_024303876.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538320.1:p.Ile251_Met252= XP_011538320.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303878.1:p.Ile251_Met252= XP_024303878.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538319.1:p.Ile251_Met252= XP_011538319.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538324.1:p.Ile251_Met252= XP_011538324.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X4 XP_016871972.1:p.Ile251_Met252= XP_016871972.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X4 XP_016871973.1:p.Ile251_Met252= XP_016871973.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X5 XP_016871976.1:p.Ile251_Met252= XP_016871976.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X3 XP_024303882.1:p.Ile251_Met252= XP_024303882.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303877.1:p.Ile251_Met252= XP_024303877.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X3 XP_016871971.1:p.Ile251_Met252= XP_016871971.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538323.1:p.Ile251_Met252= XP_011538323.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001317107.1:p.Ile251_Met252= NP_001317107.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364160.1:p.Ile251_Met252= NP_001364160.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364171.1:p.Ile251_Met252= NP_001364171.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281558.1:p.Ile251_Met252= XP_047281558.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281559.1:p.Ile251_Met252= XP_047281559.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281563.1:p.Ile251_Met252= XP_047281563.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281560.1:p.Ile251_Met252= XP_047281560.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364172.1:p.Ile251_Met252= NP_001364172.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281564.1:p.Ile251_Met252= XP_047281564.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364161.1:p.Ile251_Met252= NP_001364161.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364163.1:p.Ile251_Met252= NP_001364163.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364173.1:p.Ile251_Met252= NP_001364173.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281555.1:p.Ile251_Met252= XP_047281555.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281566.1:p.Ile251_Met252= XP_047281566.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281554.1:p.Ile251_Met252= XP_047281554.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X5 XP_047281568.1:p.Ile251_Met252= XP_047281568.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281556.1:p.Ile251_Met252= XP_047281556.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364164.1:p.Ile251_Met252= NP_001364164.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001364167.1:p.Ile251_Met252= NP_001364167.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281567.1:p.Ile251_Met252= XP_047281567.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X5 XP_047281569.1:p.Ile251_Met252= XP_047281569.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364183.1:p.Ile203_Met204= NP_001364183.1:p.Ile203del
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001364166.1:p.Ile251_Met252= NP_001364166.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 4 NP_001364175.1:p.Ile251_Met252= NP_001364175.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281565.1:p.Ile251_Met252= XP_047281565.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 6 NP_001364177.1:p.Ile251_Met252= NP_001364177.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281562.1:p.Ile251_Met252= XP_047281562.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281561.1:p.Ile251_Met252= XP_047281561.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364169.1:p.Ile251_Met252= NP_001364169.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 9 NP_001364180.1:p.Ile240_Met241= NP_001364180.1:p.Ile240del
pleckstrin homology domain-containing family A member 1 isoform 4 NP_001364174.1:p.Ile251_Met252= NP_001364174.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364159.1:p.Ile251_Met252= NP_001364159.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 7 NP_001364178.1:p.Ile231_Met232= NP_001364178.1:p.Ile231del
pleckstrin homology domain-containing family A member 1 isoform 12 NP_001364185.1:p.Ile209_Met210= NP_001364185.1:p.Ile209del
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364170.1:p.Ile251_Met252= NP_001364170.1:p.Ile251del
pleckstrin homology domain-containing family A member 1 isoform 5 NP_001364176.1:p.Ile240_Met241= NP_001364176.1:p.Ile240del
pleckstrin homology domain-containing family A member 1 isoform 8 NP_001364179.1:p.Ile248_Met249= NP_001364179.1:p.Ile248del
pleckstrin homology domain-containing family A member 1 isoform 11 NP_001364184.1:p.Ile203_Met204= NP_001364184.1:p.Ile203del
pleckstrin homology domain-containing family A member 1 isoform 13 NP_001364186.1:p.Ile203_Met204= NP_001364186.1:p.Ile203del
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364182.1:p.Ile203_Met204= NP_001364182.1:p.Ile203del
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364181.1:p.Ile203_Met204= NP_001364181.1:p.Ile203del
PLEKHA1 transcript variant 30 NM_001377258.1:c.746+637= NM_001377258.1:c.746+639_746+641del
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Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

2 SubSNP, 3 Frequency submissions
No Submitter Submission ID Date (Build)
1 GNOMAD ss4227130036 Apr 26, 2021 (155)
2 TOPMED ss4869400063 Apr 26, 2021 (155)
3 gnomAD - Genomes NC_000010.11 - 122424900 Apr 26, 2021 (155)
4 TopMed NC_000010.11 - 122424900 Apr 26, 2021 (155)
5 ALFA NC_000010.11 - 122424900 Apr 26, 2021 (155)
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History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
366398190, 84945718, ss4227130036, ss4869400063 NC_000010.11:122424899:ATA: NC_000010.11:122424899:ATAAT:AT (self)
742243092 NC_000010.11:122424899:ATAAT:AT NC_000010.11:122424899:ATAAT:AT (self)
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Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1470658955

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The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d