Name: rs5878618
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs5878618

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr6:100058967-100058984 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₈ / del(T)₇ / del(T)₆ / del(…
del(T)₈ / del(T)₇ / del(T)₆ / del(T)₄ / delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)₄ / dup(T)₅ / dup(T)₆ / dup(T)₇ / dup(T)₈ / dup(T)₉ / dup(T)₁₀ / dup(T)₁₁
Variation Type: Indel Insertion and Deletion
Frequency: dupT=0.1289 (1095/8494, ALFA)
delT=0.1917 (960/5008, 1000G)
(T)₁₈=0.4 (3/8, KOREAN)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: MCHR2-AS1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	8494	TTTTTTTTTTTTTTTTTT=0.8068	TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0005, TTTTTTTTTTTTTTTTT=0.0584, TTTTTTTTTTTTTTTTTTT=0.1289, TTTTTTTTTTTTTTTTTTTT=0.0040, TTTTTTTTTTTTTTTTTTTTTTT=0.0014, TTTTTTTTTTTTTTTTTTTTT=0.0000	0.797548	0.050409	0.152044	32
European	Sub	6896	TTTTTTTTTTTTTTTTTT=0.7626	TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0006, TTTTTTTTTTTTTTTTT=0.0716, TTTTTTTTTTTTTTTTTTT=0.1585, TTTTTTTTTTTTTTTTTTTT=0.0049, TTTTTTTTTTTTTTTTTTTTTTT=0.0017, TTTTTTTTTTTTTTTTTTTTT=0.0000	0.741733	0.064393	0.193874	32
African	Sub	1122	TTTTTTTTTTTTTTTTTT=1.0000	TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
African Others	Sub	48	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	1074	TTTTTTTTTTTTTTTTTT=1.0000	TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
Asian	Sub	32	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	20	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	12	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 1	Sub	64	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	194	TTTTTTTTTTTTTTTTTT=1.000	TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	32	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other	Sub	154	TTTTTTTTTTTTTTTTTT=0.974	TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.013, TTTTTTTTTTTTTTTTTTT=0.013, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000	0.986667	0.0	0.013333	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	8494	(T)₁₈=0.8068	del(T)₈=0.0000, del(T)₇=0.0000, del(T)₆=0.0000, delTTT=0.0000, delTT=0.0005, delT=0.0584, dupT=0.1289, dupTT=0.0040, dupTTT=0.0000, dup(T)₅=0.0014
Allele Frequency Aggregator	European	Sub	6896	(T)₁₈=0.7626	del(T)₈=0.0000, del(T)₇=0.0000, del(T)₆=0.0000, delTTT=0.0000, delTT=0.0006, delT=0.0716, dupT=0.1585, dupTT=0.0049, dupTTT=0.0000, dup(T)₅=0.0017
Allele Frequency Aggregator	African	Sub	1122	(T)₁₈=1.0000	del(T)₈=0.0000, del(T)₇=0.0000, del(T)₆=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.0000, dupTTT=0.0000, dup(T)₅=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	194	(T)₁₈=1.000	del(T)₈=0.000, del(T)₇=0.000, del(T)₆=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)₅=0.000
Allele Frequency Aggregator	Other	Sub	154	(T)₁₈=0.974	del(T)₈=0.000, del(T)₇=0.000, del(T)₆=0.000, delTTT=0.000, delTT=0.000, delT=0.013, dupT=0.013, dupTT=0.000, dupTTT=0.000, dup(T)₅=0.000
Allele Frequency Aggregator	Latin American 1	Sub	64	(T)₁₈=1.00	del(T)₈=0.00, del(T)₇=0.00, del(T)₆=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₅=0.00
Allele Frequency Aggregator	South Asian	Sub	32	(T)₁₈=1.00	del(T)₈=0.00, del(T)₇=0.00, del(T)₆=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₅=0.00
Allele Frequency Aggregator	Asian	Sub	32	(T)₁₈=1.00	del(T)₈=0.00, del(T)₇=0.00, del(T)₆=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₅=0.00
1000Genomes	Global	Study-wide	5008	(T)₁₈=0.8083	delT=0.1917
1000Genomes	African	Sub	1322	(T)₁₈=0.7663	delT=0.2337
1000Genomes	East Asian	Sub	1008	(T)₁₈=0.8075	delT=0.1925
1000Genomes	Europe	Sub	1006	(T)₁₈=0.8201	delT=0.1799
1000Genomes	South Asian	Sub	978	(T)₁₈=0.855	delT=0.145
1000Genomes	American	Sub	694	(T)₁₈=0.807	delT=0.193
KOREAN population from KRGDB	KOREAN	Study-wide	8	- No frequency provided	dupT=0.6

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 6	NC_000006.12:g.100058977_100058984del
GRCh38.p14 chr 6	NC_000006.12:g.100058978_100058984del
GRCh38.p14 chr 6	NC_000006.12:g.100058979_100058984del
GRCh38.p14 chr 6	NC_000006.12:g.100058981_100058984del
GRCh38.p14 chr 6	NC_000006.12:g.100058982_100058984del
GRCh38.p14 chr 6	NC_000006.12:g.100058983_100058984del
GRCh38.p14 chr 6	NC_000006.12:g.100058984del
GRCh38.p14 chr 6	NC_000006.12:g.100058984dup
GRCh38.p14 chr 6	NC_000006.12:g.100058983_100058984dup
GRCh38.p14 chr 6	NC_000006.12:g.100058982_100058984dup
GRCh38.p14 chr 6	NC_000006.12:g.100058981_100058984dup
GRCh38.p14 chr 6	NC_000006.12:g.100058980_100058984dup
GRCh38.p14 chr 6	NC_000006.12:g.100058979_100058984dup
GRCh38.p14 chr 6	NC_000006.12:g.100058978_100058984dup
GRCh38.p14 chr 6	NC_000006.12:g.100058977_100058984dup
GRCh38.p14 chr 6	NC_000006.12:g.100058976_100058984dup
GRCh38.p14 chr 6	NC_000006.12:g.100058975_100058984dup
GRCh38.p14 chr 6	NC_000006.12:g.100058974_100058984dup
GRCh37.p13 chr 6	NC_000006.11:g.100506853_100506860del
GRCh37.p13 chr 6	NC_000006.11:g.100506854_100506860del
GRCh37.p13 chr 6	NC_000006.11:g.100506855_100506860del
GRCh37.p13 chr 6	NC_000006.11:g.100506857_100506860del
GRCh37.p13 chr 6	NC_000006.11:g.100506858_100506860del
GRCh37.p13 chr 6	NC_000006.11:g.100506859_100506860del
GRCh37.p13 chr 6	NC_000006.11:g.100506860del
GRCh37.p13 chr 6	NC_000006.11:g.100506860dup
GRCh37.p13 chr 6	NC_000006.11:g.100506859_100506860dup
GRCh37.p13 chr 6	NC_000006.11:g.100506858_100506860dup
GRCh37.p13 chr 6	NC_000006.11:g.100506857_100506860dup
GRCh37.p13 chr 6	NC_000006.11:g.100506856_100506860dup
GRCh37.p13 chr 6	NC_000006.11:g.100506855_100506860dup
GRCh37.p13 chr 6	NC_000006.11:g.100506854_100506860dup
GRCh37.p13 chr 6	NC_000006.11:g.100506853_100506860dup
GRCh37.p13 chr 6	NC_000006.11:g.100506852_100506860dup
GRCh37.p13 chr 6	NC_000006.11:g.100506851_100506860dup
GRCh37.p13 chr 6	NC_000006.11:g.100506850_100506860dup

Gene: MCHR2-AS1, MCHR2 antisense RNA 1 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
MCHR2-AS1 transcript	NR_038384.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₈=	del(T)₈	del(T)₇	del(T)₆	del(T)₄	delTTT	delTT	delT	dupT	dupTT	dupTTT	dup(T)₄	dup(T)₅	dup(T)₆	dup(T)₇	dup(T)₈	dup(T)₉	dup(T)₁₀	dup(T)₁₁
GRCh38.p14 chr 6	NC_000006.12:g.100058967_100058984=	NC_000006.12:g.100058977_100058984del	NC_000006.12:g.100058978_100058984del	NC_000006.12:g.100058979_100058984del	NC_000006.12:g.100058981_100058984del	NC_000006.12:g.100058982_100058984del	NC_000006.12:g.100058983_100058984del	NC_000006.12:g.100058984del	NC_000006.12:g.100058984dup	NC_000006.12:g.100058983_100058984dup	NC_000006.12:g.100058982_100058984dup	NC_000006.12:g.100058981_100058984dup	NC_000006.12:g.100058980_100058984dup	NC_000006.12:g.100058979_100058984dup	NC_000006.12:g.100058978_100058984dup	NC_000006.12:g.100058977_100058984dup	NC_000006.12:g.100058976_100058984dup	NC_000006.12:g.100058975_100058984dup	NC_000006.12:g.100058974_100058984dup
GRCh37.p13 chr 6	NC_000006.11:g.100506843_100506860=	NC_000006.11:g.100506853_100506860del	NC_000006.11:g.100506854_100506860del	NC_000006.11:g.100506855_100506860del	NC_000006.11:g.100506857_100506860del	NC_000006.11:g.100506858_100506860del	NC_000006.11:g.100506859_100506860del	NC_000006.11:g.100506860del	NC_000006.11:g.100506860dup	NC_000006.11:g.100506859_100506860dup	NC_000006.11:g.100506858_100506860dup	NC_000006.11:g.100506857_100506860dup	NC_000006.11:g.100506856_100506860dup	NC_000006.11:g.100506855_100506860dup	NC_000006.11:g.100506854_100506860dup	NC_000006.11:g.100506853_100506860dup	NC_000006.11:g.100506852_100506860dup	NC_000006.11:g.100506851_100506860dup	NC_000006.11:g.100506850_100506860dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

49 SubSNP, 28 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	ABI	ss42872417	Mar 13, 2006 (137)
2	GMI	ss288788929	May 04, 2012 (137)
3	SSIP	ss947176420	Aug 21, 2014 (142)
4	1000GENOMES	ss1375905819	Aug 21, 2014 (142)
5	SWEGEN	ss2999632006	Nov 08, 2017 (151)
6	EVA_DECODE	ss3717884741	Jul 13, 2019 (153)
7	EVA_DECODE	ss3717884742	Jul 13, 2019 (153)
8	EVA_DECODE	ss3717884743	Jul 13, 2019 (153)
9	EVA_DECODE	ss3717884744	Jul 13, 2019 (153)
10	PACBIO	ss3785567951	Jul 13, 2019 (153)
11	PACBIO	ss3790904902	Jul 13, 2019 (153)
12	PACBIO	ss3795784043	Jul 13, 2019 (153)
13	KHV_HUMAN_GENOMES	ss3808580082	Jul 13, 2019 (153)
14	EVA	ss3830097929	Apr 26, 2020 (154)
15	KRGDB	ss3912203225	Apr 26, 2020 (154)
16	GNOMAD	ss4147846586	Apr 26, 2021 (155)
17	GNOMAD	ss4147846587	Apr 26, 2021 (155)
18	GNOMAD	ss4147846588	Apr 26, 2021 (155)
19	GNOMAD	ss4147846589	Apr 26, 2021 (155)
20	GNOMAD	ss4147846590	Apr 26, 2021 (155)
21	GNOMAD	ss4147846591	Apr 26, 2021 (155)
22	GNOMAD	ss4147846592	Apr 26, 2021 (155)
23	GNOMAD	ss4147846593	Apr 26, 2021 (155)
24	GNOMAD	ss4147846594	Apr 26, 2021 (155)
25	GNOMAD	ss4147846595	Apr 26, 2021 (155)
26	GNOMAD	ss4147846596	Apr 26, 2021 (155)
27	GNOMAD	ss4147846597	Apr 26, 2021 (155)
28	GNOMAD	ss4147846598	Apr 26, 2021 (155)
29	GNOMAD	ss4147846599	Apr 26, 2021 (155)
30	GNOMAD	ss4147846600	Apr 26, 2021 (155)
31	GNOMAD	ss4147846601	Apr 26, 2021 (155)
32	GNOMAD	ss4147846602	Apr 26, 2021 (155)
33	TOMMO_GENOMICS	ss5179028357	Apr 26, 2021 (155)
34	TOMMO_GENOMICS	ss5179028358	Apr 26, 2021 (155)
35	TOMMO_GENOMICS	ss5179028359	Apr 26, 2021 (155)
36	TOMMO_GENOMICS	ss5179028360	Apr 26, 2021 (155)
37	1000G_HIGH_COVERAGE	ss5269652583	Oct 13, 2022 (156)
38	1000G_HIGH_COVERAGE	ss5269652584	Oct 13, 2022 (156)
39	1000G_HIGH_COVERAGE	ss5269652585	Oct 13, 2022 (156)
40	1000G_HIGH_COVERAGE	ss5269652586	Oct 13, 2022 (156)
41	HUGCELL_USP	ss5467162420	Oct 13, 2022 (156)
42	HUGCELL_USP	ss5467162421	Oct 13, 2022 (156)
43	HUGCELL_USP	ss5467162422	Oct 13, 2022 (156)
44	HUGCELL_USP	ss5467162423	Oct 13, 2022 (156)
45	TOMMO_GENOMICS	ss5717657476	Oct 13, 2022 (156)
46	TOMMO_GENOMICS	ss5717657477	Oct 13, 2022 (156)
47	TOMMO_GENOMICS	ss5717657479	Oct 13, 2022 (156)
48	TOMMO_GENOMICS	ss5717657480	Oct 13, 2022 (156)
49	EVA	ss5855499674	Oct 13, 2022 (156)
50	1000Genomes	NC_000006.11 - 100506843	Oct 12, 2018 (152)
51	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
52	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
53	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
54	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
55	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
56	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
57	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
58	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
59	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
60	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
61	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
62	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
63	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
64	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
65	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
66	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
67	gnomAD - Genomes Submission ignored due to conflicting rows: Row 235259275 (NC_000006.12:100058966::T 30466/108656) Row 235259276 (NC_000006.12:100058966::TT 2748/108666) Row 235259277 (NC_000006.12:100058966::TTT 21/108700)...	-	Apr 26, 2021 (155)
68	KOREAN population from KRGDB	NC_000006.11 - 100506843	Apr 26, 2020 (154)
69	8.3KJPN Submission ignored due to conflicting rows: Row 36997664 (NC_000006.11:100506842::T 4647/16414) Row 36997665 (NC_000006.11:100506842:T: 2992/16414) Row 36997666 (NC_000006.11:100506842::TT 18/16414)...	-	Apr 26, 2021 (155)
70	8.3KJPN Submission ignored due to conflicting rows: Row 36997664 (NC_000006.11:100506842::T 4647/16414) Row 36997665 (NC_000006.11:100506842:T: 2992/16414) Row 36997666 (NC_000006.11:100506842::TT 18/16414)...	-	Apr 26, 2021 (155)
71	8.3KJPN Submission ignored due to conflicting rows: Row 36997664 (NC_000006.11:100506842::T 4647/16414) Row 36997665 (NC_000006.11:100506842:T: 2992/16414) Row 36997666 (NC_000006.11:100506842::TT 18/16414)...	-	Apr 26, 2021 (155)
72	8.3KJPN Submission ignored due to conflicting rows: Row 36997664 (NC_000006.11:100506842::T 4647/16414) Row 36997665 (NC_000006.11:100506842:T: 2992/16414) Row 36997666 (NC_000006.11:100506842::TT 18/16414)...	-	Apr 26, 2021 (155)
73	14KJPN Submission ignored due to conflicting rows: Row 51494580 (NC_000006.12:100058966::T 8187/28230) Row 51494581 (NC_000006.12:100058966:T: 5377/28230) Row 51494583 (NC_000006.12:100058966:TT: 2/28230)...	-	Oct 13, 2022 (156)
74	14KJPN Submission ignored due to conflicting rows: Row 51494580 (NC_000006.12:100058966::T 8187/28230) Row 51494581 (NC_000006.12:100058966:T: 5377/28230) Row 51494583 (NC_000006.12:100058966:TT: 2/28230)...	-	Oct 13, 2022 (156)
75	14KJPN Submission ignored due to conflicting rows: Row 51494580 (NC_000006.12:100058966::T 8187/28230) Row 51494581 (NC_000006.12:100058966:T: 5377/28230) Row 51494583 (NC_000006.12:100058966:TT: 2/28230)...	-	Oct 13, 2022 (156)
76	14KJPN Submission ignored due to conflicting rows: Row 51494580 (NC_000006.12:100058966::T 8187/28230) Row 51494581 (NC_000006.12:100058966:T: 5377/28230) Row 51494583 (NC_000006.12:100058966:TT: 2/28230)...	-	Oct 13, 2022 (156)
77	ALFA	NC_000006.12 - 100058967	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs34250141	May 11, 2012 (137)
rs34487857	May 11, 2012 (137)
rs71690948	May 11, 2012 (137)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss2999632006, ss5179028360	NC_000006.11:100506842:TTTTTTTT:	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTT	(self)
ss4147846602	NC_000006.12:100058966:TTTTTTTT:	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTT	(self)
5481531059	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTT	(self)
ss4147846601	NC_000006.12:100058966:TTTTTTT:	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT	(self)
5481531059	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT	(self)
5481531059	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss4147846600	NC_000006.12:100058966:TTTT:	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4147846599	NC_000006.12:100058966:TTT:	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
5481531059	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3717884741, ss4147846598, ss5269652586, ss5467162423, ss5717657479	NC_000006.12:100058966:TT:	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
5481531059	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
33322750, ss1375905819, ss5179028358	NC_000006.11:100506842:T:	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss3808580082, ss4147846597, ss5269652583, ss5467162420, ss5717657477, ss5855499674	NC_000006.12:100058966:T:	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
5481531059	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss3717884742	NC_000006.12:100058967:T:	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss288788929	NC_000006.10:100613581::T	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
19380619, ss3785567951, ss3790904902, ss3795784043, ss3830097929, ss3912203225, ss5179028357	NC_000006.11:100506842::T	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss947176420	NC_000006.11:100506843::T	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss4147846586, ss5269652584, ss5467162421, ss5717657476	NC_000006.12:100058966::T	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
5481531059	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss3717884743	NC_000006.12:100058968::T	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss42872417	NT_025741.15:4676317::T	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss5179028359	NC_000006.11:100506842::TT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	(self)
ss4147846587, ss5269652585, ss5467162422, ss5717657480	NC_000006.12:100058966::TT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	(self)
5481531059	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	(self)
ss3717884744	NC_000006.12:100058968::TT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	(self)
ss4147846588	NC_000006.12:100058966::TTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT	(self)
5481531059	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT	(self)
ss4147846589	NC_000006.12:100058966::TTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT	(self)
ss4147846590	NC_000006.12:100058966::TTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT	(self)
5481531059	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT	(self)
ss4147846591	NC_000006.12:100058966::TTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT	(self)
ss4147846592	NC_000006.12:100058966::TTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT	(self)
ss4147846593	NC_000006.12:100058966::TTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT	(self)
ss4147846594	NC_000006.12:100058966::TTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT	(self)
ss4147846595	NC_000006.12:100058966::TTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT	(self)
ss4147846596	NC_000006.12:100058966::TTTTTTTTTTT	NC_000006.12:100058966:TTTTTTTTTTT… NC_000006.12:100058966:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs5878618

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs5878618