SNP Links for Gene (Select 100033440) - SNP

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Links from Gene

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Select item 14906999961.

rs1490699996 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25174878 (GRCh38)
15:25420025 (GRCh37)
Canonical SPDI:: NC_000015.10:25174877:C:T
Gene:: SNORD115-3 (Varview), SNORD115-4 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25174878C>T, NC_000015.9:g.25420025C>T, NG_002690.1:g.393969C>T

Select item 14886697672.

rs1488669767 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25173690 (GRCh38)
15:25418837 (GRCh37)
Canonical SPDI:: NC_000015.10:25173689:C:T
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.25173690C>T, NC_000015.9:g.25418837C>T, NG_002690.1:g.392781C>T

Select item 14876958703.

rs1487695870 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25173123 (GRCh38)
15:25418270 (GRCh37)
Canonical SPDI:: NC_000015.10:25173122:A:G
Gene:: SNORD115-2 (Varview), SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.0081/36 (ALFA)
HGVS:: NC_000015.10:g.25173123A>G, NC_000015.9:g.25418270A>G, NG_002690.1:g.392214A>G

Select item 14864388764.

rs1486438876 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:25174347 (GRCh38)
15:25419494 (GRCh37)
Canonical SPDI:: NC_000015.10:25174346:C:G
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by cluster
HGVS:: NC_000015.10:g.25174347C>G, NC_000015.9:g.25419494C>G, NG_002690.1:g.393438C>G

Select item 14858726265.

rs1485872626 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25172988 (GRCh38)
15:25418135 (GRCh37)
Canonical SPDI:: NC_000015.10:25172987:A:G
Gene:: SNORD115-2 (Varview), SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.010593/173 (ALFA)
G=0.0047/633 (GnomAD)
G=0.009994/64 (1000Genomes)
G=0.019196/86 (Estonian)
HGVS:: NC_000015.10:g.25172988A>G, NC_000015.9:g.25418135A>G, NG_002690.1:g.392079A>G, NR_146177.1:n.10742A>G

Select item 14853526916.

rs1485352691 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25173746 (GRCh38)
15:25418893 (GRCh37)
Canonical SPDI:: NC_000015.10:25173745:C:T
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25173746C>T, NC_000015.9:g.25418893C>T, NG_002690.1:g.392837C>T

Select item 14834299247.

rs1483429924 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:25174739 (GRCh38)
15:25419886 (GRCh37)
Canonical SPDI:: NC_000015.10:25174738:G:C
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25174739G>C, NC_000015.9:g.25419886G>C, NG_002690.1:g.393830G>C

Select item 14833628248.

rs1483362824 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25174050 (GRCh38)
15:25419197 (GRCh37)
Canonical SPDI:: NC_000015.10:25174049:G:T
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.25174050G>T, NC_000015.9:g.25419197G>T, NG_002690.1:g.393141G>T

Select item 14818872559.

rs1481887255 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25175194 (GRCh38)
15:25420341 (GRCh37)
Canonical SPDI:: NC_000015.10:25175193:T:C
Gene:: SNORD115-3 (Varview), SNORD115-4 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.25175194T>C, NC_000015.9:g.25420341T>C, NG_002690.1:g.394285T>C

Select item 148176358910.

rs1481763589 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25173117 (GRCh38)
15:25418264 (GRCh37)
Canonical SPDI:: NC_000015.10:25173116:C:T
Gene:: SNORD115-2 (Varview), SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25173117C>T, NC_000015.9:g.25418264C>T, NG_002690.1:g.392208C>T

Select item 148043636211.

rs1480436362 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 15:25175046 (GRCh38)
15:25420193 (GRCh37)
Canonical SPDI:: NC_000015.10:25175045:T:C,NC_000015.10:25175045:T:G
Gene:: SNORD115-3 (Varview), SNORD115-4 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
HGVS:: NC_000015.10:g.25175046T>C, NC_000015.10:g.25175046T>G, NC_000015.9:g.25420193T>C, NC_000015.9:g.25420193T>G, NG_002690.1:g.394137T>C, NG_002690.1:g.394137T>G

Select item 147981982012.

rs1479819820 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 15:25173823 (GRCh38)
15:25418970 (GRCh37)
Canonical SPDI:: NC_000015.10:25173822:T:C,NC_000015.10:25173822:T:G
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
G=0.003821/7 (Korea1K)
HGVS:: NC_000015.10:g.25173823T>C, NC_000015.10:g.25173823T>G, NC_000015.9:g.25418970T>C, NC_000015.9:g.25418970T>G, NG_002690.1:g.392914T>C, NG_002690.1:g.392914T>G, NR_146177.1:n.10814T>C, NR_146177.1:n.10814T>G

Select item 147966599913.

rs1479665999 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25173056 (GRCh38)
15:25418203 (GRCh37)
Canonical SPDI:: NC_000015.10:25173055:A:G
Gene:: SNORD115-2 (Varview), SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25173056A>G, NC_000015.9:g.25418203A>G, NG_002690.1:g.392147A>G

Select item 147900407514.

rs1479004075 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 15:25174326 (GRCh38)
15:25419473 (GRCh37)
Canonical SPDI:: NC_000015.10:25174325:A:
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25174326del, NC_000015.9:g.25419473del, NG_002690.1:g.393417del

Select item 147896460715.

rs1478964607 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25175210 (GRCh38)
15:25420357 (GRCh37)
Canonical SPDI:: NC_000015.10:25175209:G:A
Gene:: SNORD115-3 (Varview), SNORD115-4 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25175210G>A, NC_000015.9:g.25420357G>A, NG_002690.1:g.394301G>A

Select item 147891331916.

rs1478913319 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:25173724 (GRCh38)
15:25418871 (GRCh37)
Canonical SPDI:: NC_000015.10:25173723:G:C
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000019/5 (TOPMED)
C=0.000035/1 (TOMMO)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000015.10:g.25173724G>C, NC_000015.9:g.25418871G>C, NG_002690.1:g.392815G>C

Select item 147853139217.

rs1478531392 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25174117 (GRCh38)
15:25419264 (GRCh37)
Canonical SPDI:: NC_000015.10:25174116:C:T
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25174117C>T, NC_000015.9:g.25419264C>T, NG_002690.1:g.393208C>T

Select item 147776783818.

rs1477767838 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25174713 (GRCh38)
15:25419860 (GRCh37)
Canonical SPDI:: NC_000015.10:25174712:G:A
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25174713G>A, NC_000015.9:g.25419860G>A, NG_002690.1:g.393804G>A

Select item 147727108919.

rs1477271089 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:25173004 (GRCh38)
15:25418151 (GRCh37)
Canonical SPDI:: NC_000015.10:25173003:T:A
Gene:: SNORD115-2 (Varview), SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25173004T>A, NC_000015.9:g.25418151T>A, NG_002690.1:g.392095T>A

Select item 147687960920.

rs1476879609 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 15:25174267 (GRCh38)
15:25419414 (GRCh37)
Canonical SPDI:: NC_000015.10:25174266:AAAA:AAA
Gene:: SNORD115-3 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
-=0.000038/10 (TOPMED)
-=0.000064/9 (GnomAD)
HGVS:: NC_000015.10:g.25174270del, NC_000015.9:g.25419417del, NG_002690.1:g.393361del