SNP Links for Gene (Select 100033805) - SNP

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Links from Gene

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Select item 14905309961.

rs1490530996 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25225400 (GRCh38)
15:25470547 (GRCh37)
Canonical SPDI:: NC_000015.10:25225399:T:C
Gene:: SNORD115-30 (Varview), SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25225400T>C, NC_000015.9:g.25470547T>C, NG_002690.1:g.444491T>C

Select item 14903508902.

rs1490350890 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 15:25227125 (GRCh38)
15:25472272 (GRCh37)
Canonical SPDI:: NC_000015.10:25227124:C:A,NC_000015.10:25227124:C:G
Gene:: SNORD115-31 (Varview), SNORD115-32 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25227125C>A, NC_000015.10:g.25227125C>G, NC_000015.9:g.25472272C>A, NC_000015.9:g.25472272C>G, NG_002690.1:g.446216C>A, NG_002690.1:g.446216C>G, NR_003346.1:n.17C>A, NR_003346.1:n.17C>G

Select item 14894839123.

rs1489483912 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:25226790 (GRCh38)
15:25471937 (GRCh37)
Canonical SPDI:: NC_000015.10:25226789:A:C
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25226790A>C, NC_000015.9:g.25471937A>C, NG_002690.1:g.445881A>C

Select item 14871485834.

rs1487148583 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:25225951 (GRCh38)
15:25471098 (GRCh37)
Canonical SPDI:: NC_000015.10:25225950:T:G
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25225951T>G, NC_000015.9:g.25471098T>G, NG_002690.1:g.445042T>G

Select item 14852501605.

rs1485250160 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25225623 (GRCh38)
15:25470770 (GRCh37)
Canonical SPDI:: NC_000015.10:25225622:T:C
Gene:: SNORD115-30 (Varview), SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0./0 (GnomAD)
HGVS:: NC_000015.10:g.25225623T>C, NC_000015.9:g.25470770T>C, NG_002690.1:g.444714T>C

Select item 14840750386.

rs1484075038 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25226665 (GRCh38)
15:25471812 (GRCh37)
Canonical SPDI:: NC_000015.10:25226664:G:A
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000142/2 (TOMMO)
HGVS:: NC_000015.10:g.25226665G>A, NC_000015.9:g.25471812G>A, NG_002690.1:g.445756G>A

Select item 14838149097.

rs1483814909 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:25227111 (GRCh38)
15:25472258 (GRCh37)
Canonical SPDI:: NC_000015.10:25227110:G:A,NC_000015.10:25227110:G:T
Gene:: SNORD115-31 (Varview), SNORD115-32 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25227111G>A, NC_000015.10:g.25227111G>T, NC_000015.9:g.25472258G>A, NC_000015.9:g.25472258G>T, NG_002690.1:g.446202G>A, NG_002690.1:g.446202G>T, NR_003346.1:n.3G>A, NR_003346.1:n.3G>T

Select item 14824324218.

rs1482432421 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25226024 (GRCh38)
15:25471171 (GRCh37)
Canonical SPDI:: NC_000015.10:25226023:A:G
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.25226024A>G, NC_000015.9:g.25471171A>G, NG_002690.1:g.445115A>G

Select item 14812757439.

rs1481275743 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 15:25225925 (GRCh38)
15:25471072 (GRCh37)
Canonical SPDI:: NC_000015.10:25225924:T:A,NC_000015.10:25225924:T:C
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25225925T>A, NC_000015.10:g.25225925T>C, NC_000015.9:g.25471072T>A, NC_000015.9:g.25471072T>C, NG_002690.1:g.445016T>A, NG_002690.1:g.445016T>C

Select item 148085673010.

rs1480856730 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25225820 (GRCh38)
15:25470967 (GRCh37)
Canonical SPDI:: NC_000015.10:25225819:T:C
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.25225820T>C, NC_000015.9:g.25470967T>C, NG_002690.1:g.444911T>C

Select item 147854343511.

rs1478543435 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25226580 (GRCh38)
15:25471727 (GRCh37)
Canonical SPDI:: NC_000015.10:25226579:G:A
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25226580G>A, NC_000015.9:g.25471727G>A, NG_002690.1:g.445671G>A

Select item 147511002912.

rs1475110029 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:25227538 (GRCh38)
15:25472685 (GRCh37)
Canonical SPDI:: NC_000015.10:25227537:T:A
Gene:: SNORD115-31 (Varview), SNORD115-32 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25227538T>A, NC_000015.9:g.25472685T>A, NG_002690.1:g.446629T>A

Select item 147481754113.

rs1474817541 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25226304 (GRCh38)
15:25471451 (GRCh37)
Canonical SPDI:: NC_000015.10:25226303:G:A
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25226304G>A, NC_000015.9:g.25471451G>A, NG_002690.1:g.445395G>A

Select item 147419486614.

rs1474194866 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:25226365 (GRCh38)
15:25471512 (GRCh37)
Canonical SPDI:: NC_000015.10:25226364:C:G,NC_000015.10:25226364:C:T
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.25226365C>G, NC_000015.10:g.25226365C>T, NC_000015.9:g.25471512C>G, NC_000015.9:g.25471512C>T, NG_002690.1:g.445456C>G, NG_002690.1:g.445456C>T

Select item 147362232215.

rs1473622322 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:25226550 (GRCh38)
15:25471697 (GRCh37)
Canonical SPDI:: NC_000015.10:25226549:G:A,NC_000015.10:25226549:G:T
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000108/2 (ALFA)
A=0.000036/5 (GnomAD)
A=0.000446/2 (Estonian)
HGVS:: NC_000015.10:g.25226550G>A, NC_000015.10:g.25226550G>T, NC_000015.9:g.25471697G>A, NC_000015.9:g.25471697G>T, NG_002690.1:g.445641G>A, NG_002690.1:g.445641G>T

Select item 147334337116.

rs1473343371 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:25227482 (GRCh38)
15:25472629 (GRCh37)
Canonical SPDI:: NC_000015.10:25227481:T:G
Gene:: SNORD115-31 (Varview), SNORD115-32 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000015.10:g.25227482T>G, NC_000015.9:g.25472629T>G, NG_002690.1:g.446573T>G

Select item 147332767217.

rs1473327672 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25226853 (GRCh38)
15:25472000 (GRCh37)
Canonical SPDI:: NC_000015.10:25226852:C:T
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25226853C>T, NC_000015.9:g.25472000C>T, NG_002690.1:g.445944C>T

Select item 147255629818.

rs1472556298 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25225451 (GRCh38)
15:25470598 (GRCh37)
Canonical SPDI:: NC_000015.10:25225450:G:A
Gene:: SNORD115-30 (Varview), SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25225451G>A, NC_000015.9:g.25470598G>A, NG_002690.1:g.444542G>A

Select item 147184636119.

rs1471846361 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:25226340 (GRCh38)
15:25471487 (GRCh37)
Canonical SPDI:: NC_000015.10:25226339:C:A
Gene:: SNORD115-31 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000015.10:g.25226340C>A, NC_000015.9:g.25471487C>A, NG_002690.1:g.445431C>A

Select item 147089027720.

rs1470890277 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25227583 (GRCh38)
15:25472730 (GRCh37)
Canonical SPDI:: NC_000015.10:25227582:C:T
Gene:: SNORD115-31 (Varview), SNORD115-32 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25227583C>T, NC_000015.9:g.25472730C>T, NG_002690.1:g.446674C>T